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从机器学习推导抗癌肽的生物活性

Unraveling the bioactivity of anticancer peptides as deduced from machine learning.

作者信息

Shoombuatong Watshara, Schaduangrat Nalini, Nantasenamat Chanin

机构信息

Center of Data Mining and Biomedical Informatics, Faculty of Medical Technology, Mahidol University, Bangkok 10700, Thailand.

出版信息

EXCLI J. 2018 Jul 25;17:734-752. doi: 10.17179/excli2018-1447. eCollection 2018.

Abstract

Cancer imposes a global health burden as it represents one of the leading causes of morbidity and mortality while also giving rise to significant economic burden owing to the associated expenditures for its monitoring and treatment. In spite of advancements in cancer therapy, the low success rate and recurrence of tumor has necessitated the ongoing search for new therapeutic agents. Aside from drugs based on small molecules and protein-based biopharmaceuticals, there has been an intense effort geared towards the development of peptide-based therapeutics owing to its favorable and intrinsic properties of being relatively small, highly selective, potent, safe and low in production costs. In spite of these advantages, there are several inherent weaknesses that are in need of attention in the design and development of therapeutic peptides. An abundance of data on bioactive and therapeutic peptides have been accumulated over the years and the burgeoning area of artificial intelligence has set the stage for the lucrative utilization of machine learning to make sense of these large and high-dimensional data. This review summarizes the current state-of-the-art on the application of machine learning for studying the bioactivity of anticancer peptides along with future outlook of the field. Data and R codes used in the analysis herein are available on GitHub at https://github.com/Shoombuatong2527/anticancer-peptides-review.

摘要

癌症给全球带来了健康负担,因为它是发病和死亡的主要原因之一,同时由于其监测和治疗的相关支出,也造成了巨大的经济负担。尽管癌症治疗取得了进展,但肿瘤的低成功率和复发率使得人们一直在寻找新的治疗药物。除了基于小分子的药物和基于蛋白质的生物药物外,由于其相对较小、高度选择性、高效、安全且生产成本低等有利的内在特性,人们一直在大力开发基于肽的治疗药物。尽管有这些优点,但在治疗肽的设计和开发中仍有几个固有弱点需要关注。多年来已经积累了大量关于生物活性肽和治疗性肽的数据,而人工智能的蓬勃发展为利用机器学习来理解这些大量的高维数据创造了有利条件。本综述总结了机器学习在研究抗癌肽生物活性方面的当前最新进展以及该领域的未来展望。本文分析中使用的数据和R代码可在GitHub上获取,网址为https://github.com/Shoombuatong2527/anticancer-peptides-review。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/245d/6123611/b663a0946d6c/EXCLI-17-734-t-001.jpg

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