Department of Physiology & Biophysics, Boston University School of Medicine, Boston, Massachusetts.
Department of Physiology & Biophysics, Boston University School of Medicine, Boston, Massachusetts.
Biophys J. 2018 Sep 18;115(6):1082-1092. doi: 10.1016/j.bpj.2018.08.017. Epub 2018 Aug 18.
Often considered an archetypal dimeric coiled coil, tropomyosin nonetheless exhibits distinctive "noncanonical" core residues located at the hydrophobic interface between its component α-helices. Notably, a charged aspartate, D137, takes the place of nonpolar residues otherwise present. Much speculation has been offered to rationalize potential local coiled-coil instability stemming from D137 and its effect on regulatory transitions of tropomyosin over actin filaments. Although experimental approaches such as electron cryomicroscopy reconstruction are optimal for defining average tropomyosin positions on actin filaments, to date, these methods have not captured the dynamics of tropomyosin residues clustered around position 137 or elsewhere. In contrast, computational biochemistry, involving molecular dynamics simulation, is a compelling choice to extend the understanding of local and global tropomyosin behavior on actin filaments at high resolution. Here, we report on molecular dynamics simulation of actin-free and actin-associated tropomyosin, showing noncanonical residue D137 as a locus for tropomyosin twist variation, with marked effects on actin-tropomyosin interactions. We conclude that D137-sponsored coiled-coil twisting is likely to optimize electrostatic side-chain contacts between tropomyosin and actin on the assembled thin filament, while offsetting disparities between tropomyosin pseudorepeat and actin subunit periodicities. We find that D137 has only minor local effects on tropomyosin coiled-coil flexibility, (i.e., on its flexural mobility). Indeed, D137-associated overtwisting may actually augment tropomyosin stiffness on actin filaments. Accordingly, such twisting-induced stiffness of tropomyosin is expected to enhance cooperative regulatory translocation of the tropomyosin cable over actin.
通常被认为是典型的二聚卷曲螺旋,原肌球蛋白表现出独特的“非典型”核心残基,位于其组成α-螺旋之间的疏水性界面。值得注意的是,带电荷的天冬氨酸 D137 取代了原本存在的非极性残基。人们提出了很多推测来合理化源自 D137 的潜在局部卷曲螺旋不稳定性及其对原肌球蛋白在肌动蛋白丝上的调节转变的影响。尽管电子cryomicroscopy 重建等实验方法是定义肌动蛋白丝上原肌球蛋白平均位置的最佳方法,但迄今为止,这些方法尚未捕获围绕位置 137 或其他位置聚集的原肌球蛋白残基的动力学。相比之下,涉及分子动力学模拟的计算生物化学是扩展对肌动蛋白丝上局部和全局原肌球蛋白行为的高分辨率理解的有力选择。在这里,我们报告了肌动蛋白游离和肌动蛋白结合原肌球蛋白的分子动力学模拟,显示非典型残基 D137 是原肌球蛋白扭曲变化的位置,对肌动蛋白-原肌球蛋白相互作用有明显影响。我们得出结论,D137 赞助的卷曲螺旋扭曲很可能优化组装的薄丝上原肌球蛋白和肌动蛋白之间的静电侧链接触,同时抵消原肌球蛋白假重复和肌动蛋白亚基周期性之间的差异。我们发现 D137 对原肌球蛋白卷曲螺旋灵活性(即弯曲流动性)只有较小的局部影响。事实上,D137 相关的过度扭曲可能会增加原肌球蛋白在肌动蛋白丝上的刚度。因此,原肌球蛋白这种扭曲诱导的刚度预计会增强原肌球蛋白缆绳在肌动蛋白上的协同调节易位。