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基于高通量测序的黄河三角洲老化油泥周边土壤微生物群落结构与多样性研究

Soil Microbial Community Structure and Diversity around the Aging Oil Sludge in Yellow River Delta as Determined by High-Throughput Sequencing.

作者信息

Kuang Shaoping, Su Yaqing, Wang Huihui, Yu Wenjuan, Lang Qiaolin, Matangi Ravichandra

机构信息

College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, Shandong Province 266042, China.

Advanced Analytical Laboratory, DST-PURSE Programme, Andhra University, Visakhapatnam 53003, India.

出版信息

Archaea. 2018 Aug 30;2018:7861805. doi: 10.1155/2018/7861805. eCollection 2018.

Abstract

Microorganisms are sensitive indicators of edaphic environmental variation. The Illumina MiSeq sequencing technology was used to analyze soil bacterial community diversity around an aging oil sludge in the Yellow River Delta. The alpha diversity index of soil bacterial community results (Ace, Chao, Shannon, and Simpson) determined that bacterial community diversity sampling within the scope of a 20 cm radius from the center of an aging oil sludge spot showed the most abundant diversity. The level of diversity distributed symmetrically with radial direction from the center of the aging oil sludge spot. Over the distance of 100 m from the center, bacterial community diversity tends to be monotonous, with small differences especially in the horizontal direction underground. The alpha-diversity indicators also showed that the bacterial diversity of samples were close under the aging oil sludge. In addition, the aging oil sludge inhibited the growth of bacteria compared with the referenced unpolluted soil sample and also increased the diversities of soil bacteria. At the phylum level, the , , and existing in the aging oil sludge-contaminated wetland soil constituted a larger proportion of the community, while the proportion of was relatively less. On the contrary, showed the highest content of 63.8% in the referenced soil. Under the genus level and family level, the corresponding strains that resisted the aging oil sludge were selected. According to the bacterial diversity analysis, the basic structure of the bacterial community which could be used for remediation of aging oil sludge-contaminated soil was also developed.

摘要

微生物是土壤环境变化的敏感指标。利用Illumina MiSeq测序技术分析黄河三角洲老化油泥周边土壤细菌群落多样性。土壤细菌群落的α多样性指数(Ace、Chao、Shannon和Simpson)表明,在老化油泥点中心半径20 cm范围内的细菌群落多样性采样显示出最丰富的多样性。多样性水平从老化油泥点中心沿径向对称分布。在距中心100 m的距离内,细菌群落多样性趋于单调,尤其是在地下水平方向差异较小。α多样性指标还表明,老化油泥下的样本细菌多样性相近。此外,与参考的未污染土壤样本相比,老化油泥抑制了细菌的生长,但也增加了土壤细菌的多样性。在门水平上,老化油泥污染湿地土壤中存在的变形菌门(Proteobacteria)、放线菌门(Actinobacteria)和酸杆菌门(Acidobacteria)在群落中占较大比例,而绿弯菌门(Chloroflexi)的比例相对较小。相反,参考土壤中绿弯菌门含量最高,为63.8%。在属水平和科水平上,筛选出了抗老化油泥的相应菌株。根据细菌多样性分析,还构建了可用于修复老化油泥污染土壤的细菌群落基本结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67f2/6136505/26c8a39a4b9b/ARCHAEA2018-7861805.001.jpg

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