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通过将各种序列特征提取到周氏广义伪氨基酸组成中预测膜蛋白及其类型。

Predicting membrane proteins and their types by extracting various sequence features into Chou's general PseAAC.

作者信息

Butt Ahmad Hassan, Rasool Nouman, Khan Yaser Daanial

机构信息

Department of Computer Science, School of Systems and Technology, University of Management and Technology, C-II, Johar Town, P.O. Box 10033, Lahore, 54770, Pakistan.

Department of Life Sciences, School of Science, University of Management and Technology, C-II, Johar Town, P.O. Box 10033, Lahore, 54770, Pakistan.

出版信息

Mol Biol Rep. 2018 Dec;45(6):2295-2306. doi: 10.1007/s11033-018-4391-5. Epub 2018 Sep 20.

Abstract

For many biological functions membrane proteins (MPs) are considered crucial. Due to this nature of MPs, many pharmaceutical agents have reflected them as attractive targets. It bears indispensable importance that MPs are predicted with accurate measures using effective and efficient computational models (CMs). Annotation of MPs using in vitro analytical techniques is time-consuming and expensive; and in some cases, it can prove to be intractable. Due to this scenario, automated prediction and annotation of MPs through CM based techniques have appeared to be useful. Based on the use of computational intelligence and statistical moments based feature set, an MP prediction framework is proposed. Furthermore, the previously used dataset has been enhanced by incorporating new MPs from the latest release of UniProtKB. Rigorous experimentation proves that the use of statistical moments with a multilayer neural network, trained using back-propagation based prediction techniques allows more thorough results.

摘要

对于许多生物学功能而言,膜蛋白(MPs)被认为至关重要。由于膜蛋白的这种特性,许多药物制剂将它们视为有吸引力的靶点。使用有效且高效的计算模型(CMs)以准确的方法预测膜蛋白具有不可或缺的重要性。使用体外分析技术对膜蛋白进行注释既耗时又昂贵;而且在某些情况下,事实证明这是难以处理的。由于这种情况,通过基于CM的技术对膜蛋白进行自动预测和注释似乎很有用。基于计算智能和基于统计矩的特征集的使用,提出了一种膜蛋白预测框架。此外,通过纳入来自UniProtKB最新版本的新膜蛋白,增强了先前使用的数据集。严格的实验证明,将统计矩与使用基于反向传播的预测技术训练的多层神经网络相结合,可以得到更全面的结果。

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