Laboratoire de Physiologie Cellulaire et Végétale, CNRS Univ. Grenoble Alpes, CEA, INRA, BIG Grenoble, Grenoble, France.
Institute of Plant Sciences Paris-Saclay, IPS2, CNRS-INRA-University of Paris Sud, Paris-Diderot and Evry, University of Paris Saclay, Gif sur Yvette, France.
Adv Exp Med Biol. 2018;1087:329-343. doi: 10.1007/978-981-13-1426-1_26.
Circular RNAs (circRNAs) are covalently closed, single-stranded transcripts that are ubiquitously expressed in all eukaryotes and even prokaryotic archaea. Although once regarded as splicing artifacts, circRNAs are a novel class of regulatory molecules with diverse biological functions, including regulation of transcription, modulation of alternative splicing, and binding of miRNAs and proteins. The majority of studies of circRNAs have been performed in animals with a focus on the biogenesis, function, and mechanistic characterization of these molecules. In contrast, the study of circRNAs in plants is just emerging. Interestingly, recent circRNA profiling studies in model plant systems show distinct features of plant circRNAs compared with those from animals, including putative roles in stress response, differences in expression patterns, and novel biogenesis mechanisms. This provides a great opportunity to broaden our knowledge of circRNAs using plant model systems, such as Arabidopsis and rice, which are ideal for phenotypic characterization and genetic studies. In this review, we summarize current knowledge of plant circRNAs, discuss their identification and biogenesis, describe potential functions, and propose future perspectives for plant circRNA study.
环状 RNA(circRNAs)是共价封闭的单链转录本,在所有真核生物甚至原核古菌中广泛表达。虽然曾经被认为是剪接的副产物,但 circRNAs 是一类具有多种生物学功能的新型调控分子,包括转录调控、可变剪接的调节以及 miRNA 和蛋白质的结合。circRNAs 的大多数研究都是在动物中进行的,主要集中在这些分子的生物发生、功能和机制特征上。相比之下,植物 circRNAs 的研究才刚刚开始。有趣的是,最近在模式植物系统中的 circRNA 分析研究表明,与动物相比,植物 circRNAs 具有明显的特征,包括在应激反应中的潜在作用、表达模式的差异和新的生物发生机制。这为利用植物模型系统(如拟南芥和水稻)来拓宽我们对 circRNAs 的认识提供了很好的机会,这些系统非常适合表型特征和遗传研究。在这篇综述中,我们总结了植物 circRNAs 的现有知识,讨论了它们的鉴定和生物发生,描述了它们的潜在功能,并提出了植物 circRNA 研究的未来展望。