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ReFRAME 文库作为一个全面的药物重定位文库及其在隐孢子虫病治疗中的应用。

The ReFRAME library as a comprehensive drug repurposing library and its application to the treatment of cryptosporidiosis.

机构信息

California Institute for Biomedical Research, La Jolla, CA 92037.

Department of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037.

出版信息

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10750-10755. doi: 10.1073/pnas.1810137115. Epub 2018 Oct 3.

DOI:10.1073/pnas.1810137115
PMID:30282735
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6196526/
Abstract

The chemical diversity and known safety profiles of drugs previously tested in humans make them a valuable set of compounds to explore potential therapeutic utility in indications outside those originally targeted, especially neglected tropical diseases. This practice of "drug repurposing" has become commonplace in academic and other nonprofit drug-discovery efforts, with the appeal that significantly less time and resources are required to advance a candidate into the clinic. Here, we report a comprehensive open-access, drug repositioning screening set of 12,000 compounds (termed ReFRAME; Repurposing, Focused Rescue, and Accelerated Medchem) that was assembled by combining three widely used commercial drug competitive intelligence databases (Clarivate Integrity, GVK Excelra GoStar, and Citeline Pharmaprojects), together with extensive patent mining of small molecules that have been dosed in humans. To date, 12,000 compounds (∼80% of compounds identified from data mining) have been purchased or synthesized and subsequently plated for screening. To exemplify its utility, this collection was screened against spp., a major cause of childhood diarrhea in the developing world, and two active compounds previously tested in humans for other therapeutic indications were identified. Both compounds, VB-201 and a structurally related analog of ASP-7962, were subsequently shown to be efficacious in animal models of infection at clinically relevant doses, based on available human doses. In addition, an open-access data portal (https://reframedb.org) has been developed to share ReFRAME screen hits to encourage additional follow-up and maximize the impact of the ReFRAME screening collection.

摘要

先前在人类中进行过测试的药物具有化学多样性和已知的安全性,这使它们成为一组有价值的化合物,可以探索在最初目标以外的适应症(尤其是被忽视的热带病)中的潜在治疗用途。这种“药物再利用”的做法在学术和其他非营利性药物发现工作中已很常见,其吸引力在于,将候选药物推进临床需要的时间和资源要少得多。在这里,我们报告了一个全面的开放获取的、药物重新定位筛选集,其中包含 12000 种化合物(称为 ReFRAME;再利用、重点抢救和加速药物化学),这些化合物是通过将三个广泛使用的商业药物竞争情报数据库(Clarivate Integrity、GVK Excelra GoStar 和 Citeline Pharmaprojects)结合在一起,并对已在人体中给药的小分子进行广泛的专利挖掘而组合而成的。迄今为止,已购买或合成了 12000 种化合物(约 80%的化合物是从数据挖掘中识别出来的),并随后对其进行了筛选。为了举例说明其用途,该集合针对 spp.进行了筛选,这是发展中国家儿童腹泻的主要原因,并且先前已经针对其他治疗适应症在人类中测试过的两种活性化合物被鉴定出来。这两种化合物,VB-201 和 ASP-7962 的结构相关类似物,随后在临床相关剂量的 感染动物模型中显示出有效,基于可用的人类剂量。此外,还开发了一个开放获取的数据门户(https://reframedb.org),以共享 ReFRAME 筛选结果,以鼓励进一步跟进并最大限度地提高 ReFRAME 筛选集的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55f5/6196526/aa8e340418a2/pnas.1810137115fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55f5/6196526/e4adcb785857/pnas.1810137115fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55f5/6196526/79cde9e0441e/pnas.1810137115fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55f5/6196526/aa8e340418a2/pnas.1810137115fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55f5/6196526/e4adcb785857/pnas.1810137115fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55f5/6196526/79cde9e0441e/pnas.1810137115fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55f5/6196526/aa8e340418a2/pnas.1810137115fig03.jpg

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