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用EcoRI限制性内切酶切割单链寡核苷酸。

Cleavage of single stranded oligonucleotides by EcoRI restriction endonuclease.

作者信息

Bischofberger N, Ng P G, Webb T R, Matteucci M D

出版信息

Nucleic Acids Res. 1987 Jan 26;15(2):709-16. doi: 10.1093/nar/15.2.709.

DOI:10.1093/nar/15.2.709
PMID:3029689
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC340461/
Abstract

The 31mer 5'-TCA ACG CTA GAA TTC GGA TCC ATC GCT TGG T, the complementary 33mer 5'-CCA AGC GAT GGA TCC GAA TTC TAG CGT TGA GAT, the 40mer 5'-GGC CAG GAT GGT GAA GAA TTC GAT CCG GTA CGT AGC TAA G, and the complementary 42mer 5'-TAC TTA GCT ACG TAC CGG ATC GAA TTC TTC ACC ATC CTG GCC were synthesized and their reactivity towards EcoRI was studied. It was found that the 31mer and the 40mer were cleaved at a comparable rate to the 31mer-33mer hybrid and the 40mer-42mer hybrid, respectively. The rate of cleavage of the 33mer and the 42mer was an order of magnitude lower. To rule out possible intermolecular duplex formation, the 33mer was immobilized on cellulose by ligation and labeled with alpha 32P-dCTP using Klenow fragment of E. coli DNA polymerase. EcoRI cleaved this immobilized oligomer into specific fragments.

摘要

合成了31聚体5'-TCA ACG CTA GAA TTC GGA TCC ATC GCT TGG T、互补的33聚体5'-CCA AGC GAT GGA TCC GAA TTC TAG CGT TGA GAT、40聚体5'-GGC CAG GAT GGT GAA GAA TTC GAT CCG GTA CGT AGC TAA G以及互补的42聚体5'-TAC TTA GCT ACG TAC CGG ATC GAA TTC TTC ACC ATC CTG GCC,并研究了它们对EcoRI的反应性。发现31聚体和40聚体分别以与31聚体-33聚体杂交体和40聚体-42聚体杂交体相当的速率被切割。33聚体和42聚体的切割速率低一个数量级。为了排除可能的分子间双链体形成,通过连接将33聚体固定在纤维素上,并使用大肠杆菌DNA聚合酶的Klenow片段用α-32P-dCTP进行标记。EcoRI将这种固定化的寡聚物切割成特定的片段。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee32/340461/56af50c67392/nar00246-0332-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee32/340461/2897628697ff/nar00246-0330-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee32/340461/56af50c67392/nar00246-0332-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee32/340461/2897628697ff/nar00246-0330-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee32/340461/56af50c67392/nar00246-0332-a.jpg

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引用本文的文献

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J Bacteriol. 1987 Nov;169(11):5035-45. doi: 10.1128/jb.169.11.5035-5045.1987.
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本文引用的文献

1
Kinked DNA in crystalline complex with EcoRI endonuclease.与EcoRI核酸内切酶形成晶体复合物的扭结DNA。
Nature. 1984;309(5966):327-31. doi: 10.1038/309327a0.
2
The interaction of the EcoRI restriction endonuclease with its substrate. A physico-chemical study employing natural and synthetic oligonucleotides and polynucleotides.EcoRI限制性内切酶与其底物的相互作用。一项使用天然和合成寡核苷酸及多核苷酸的物理化学研究。
Eur J Biochem. 1980 Feb;104(1):101-7. doi: 10.1111/j.1432-1033.1980.tb04405.x.
3
Cleavage of single strand oligonucleotides and bacteriophage phi X174 DNA by Msp I endonuclease.
Backbone-modified oligonucleotides containing a butanediol-1,3 moiety as a 'vicarious segment' for the deoxyribosyl moiety--synthesis and enzyme studies.
含有丁二醇-1,3部分作为脱氧核糖部分的“替代片段”的主链修饰寡核苷酸——合成与酶学研究。
Nucleic Acids Res. 1990 Apr 25;18(8):2065-8. doi: 10.1093/nar/18.8.2065.
Msp I 核酸内切酶对单链寡核苷酸和噬菌体 phi X174 DNA 的切割
J Biol Chem. 1980 Nov 25;255(22):10559-62.
4
Gene synthesis machines: DNA chemistry and its uses.基因合成机器:DNA化学及其应用
Science. 1985 Oct 18;230(4723):281-5. doi: 10.1126/science.3863253.
5
Synthesis of DNA via deoxynucleoside H-phosphonate intermediates.通过脱氧核苷H-膦酸酯中间体合成DNA。
Nucleic Acids Res. 1986 Jul 11;14(13):5399-407. doi: 10.1093/nar/14.13.5399.
6
Interaction of EcoRII restriction and modification enzymes with synthetic DNA fragments. VI. The binding and cleavage of substrates containing nucleotide analogs.EcoRII限制酶和修饰酶与合成DNA片段的相互作用。VI. 含核苷酸类似物的底物的结合与切割
Nucleic Acids Res. 1985 Dec 20;13(24):8983-98. doi: 10.1093/nar/13.24.8983.
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Nucleic Acids Res. 1985 Dec 20;13(24):8969-81. doi: 10.1093/nar/13.24.8969.
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Nucleic Acids Res. 1985 Oct 11;13(19):7015-24. doi: 10.1093/nar/13.19.7015.
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Type II restriction endonucleases cleave single-stranded DNAs in general.一般来说,II型限制性内切核酸酶切割单链DNA。
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