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基因组提供了对适应性辐射的深入了解,并揭示了一条具有独特历史的非常多态的染色体。

The genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history.

机构信息

Gregor Mendel Institute, Austrian Academy of Sciences, Vienna BioCenter, Vienna, Austria.

Department of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, United States.

出版信息

Elife. 2018 Oct 16;7:e36426. doi: 10.7554/eLife.36426.

DOI:10.7554/eLife.36426
PMID:30325307
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6255393/
Abstract

The columbine genus is a classic example of an adaptive radiation, involving a wide variety of pollinators and habitats. Here we present the genome assembly of 'Goldsmith', complemented by high-coverage sequencing data from 10 wild species covering the world-wide distribution. Our analyses reveal extensive allele sharing among species and demonstrate that introgression and selection played a role in the radiation. We also present the remarkable discovery that the evolutionary history of an entire chromosome differs from that of the rest of the genome - a phenomenon that we do not fully understand, but which highlights the need to consider chromosomes in an evolutionary context.

摘要

耧斗菜属是适应辐射的经典范例,涉及各种各样的传粉者和栖息地。在这里,我们呈现了“戈德史密斯”的基因组组装,同时还提供了来自覆盖全球分布的 10 个野生种的高覆盖测序数据。我们的分析揭示了物种之间广泛的等位基因共享,并表明基因渐渗和选择在辐射中发挥了作用。我们还发现了一个惊人的现象,即整个染色体的进化历史与基因组的其余部分不同 - 我们不完全理解这种现象,但它强调了需要在进化背景下考虑染色体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/ad4fa8d493c8/elife-36426-fig8-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/ba2bc7695aae/elife-36426-fig1.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/6c706cd873d3/elife-36426-fig2-figsupp2.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/747083551cf4/elife-36426-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/ad4fa8d493c8/elife-36426-fig8-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/ba2bc7695aae/elife-36426-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/957649d455a7/elife-36426-fig1-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/85d5806747c9/elife-36426-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/03c17809af15/elife-36426-fig2-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/6c706cd873d3/elife-36426-fig2-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/aaf5c95c7246/elife-36426-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/cdca1f5e9a04/elife-36426-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/4f86554d1242/elife-36426-fig3-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/80e5b9f92a31/elife-36426-fig3-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/41d96b729255/elife-36426-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/ab6b4d855c88/elife-36426-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/7ed3e2f419a6/elife-36426-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/98da1f3a4a5d/elife-36426-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/15aa8cb02f4c/elife-36426-fig6-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/7c892f83a6e2/elife-36426-fig6-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/92d368af99cd/elife-36426-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/e2d1598d9129/elife-36426-fig7-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/c3d7834c55ef/elife-36426-fig7-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7057/6255393/747083551cf4/elife-36426-fig8.jpg
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3
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Genes (Basel). 2025 Feb 26;16(3):280. doi: 10.3390/genes16030280.
4
Chromosome-scale genome assembly of Phyllanthus emblica L. 'Yingyu'.余甘子‘英玉’的染色体级基因组组装
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5
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6
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