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拟南芥壁基因家族:花发育过程中的全基因组鉴定、系统发育、进化扩张和表达分析。

Gene Family in Wall.: Genome-Wide Identification, Phylogeny, Evolutionary Expansion, and Expression Analyses during Floral Development.

机构信息

The Key Laboratory of Medicinal Plant Biology of Yunnan Province, National-Local Joint Engineering Research Center on Germplasm Innovation, Utilization of Chinese Medicinal Materials in Southwest, College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China.

National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China.

出版信息

Int J Mol Sci. 2024 Aug 15;25(16):8902. doi: 10.3390/ijms25168902.

Abstract

The gene family represents a widely distributed class of plant transcription factors. This gene family plays an important role in many aspects of plant growth and development. However, the characterization of genes present in the genome of has not been reported. Here, we describe the bioinformatic identification and characterization of 88 genes in this species, and the identification of members of the gene family in species within the order most closely related to . The genes were shown to exhibit a higher degree of conservation compared to those of , as evidenced by phylogeny, conserved motifs, gene structure, and replication event analyses. Cis-acting element analysis confirmed the involvement of genes in a variety of developmental processes, including growth, cell differentiation, and reproduction mediated by hormone synthesis. In addition, through homology comparisons with the equivalent gene family in , protein regulatory network prediction and transcriptome data analysis of floral organs across three time periods of flower development, 17 candidate genes were shown to exhibit biased expression in two floral phenotypes of . This suggests their potential involvement in floral development (anther development) in this species.

摘要

基因家族代表了一类广泛分布的植物转录因子。这个基因家族在植物生长和发育的许多方面都起着重要作用。然而,在 物种的基因组中存在的 基因的特征尚未被报道。在这里,我们描述了在这个物种中 88 个 基因的生物信息学鉴定和特征,并鉴定了与 关系最密切的目 中的物种中的 基因家族成员。通过系统发生、保守基序、基因结构和复制事件分析, 基因表现出比 更高的保守性。顺式作用元件分析证实, 基因参与了多种发育过程,包括由激素合成介导的生长、细胞分化和繁殖。此外,通过与 中相应的基因家族进行同源比较,对花发育三个时期的花器官进行蛋白质调控网络预测和转录组数据分析,表明 17 个候选基因在 两种花表型中表现出偏表达。这表明它们可能参与了该物种的花发育(花药发育)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/045d/11354770/27e5821fcf70/ijms-25-08902-g001.jpg

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