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一种用于BicD2/货物相互作用的定量模型。

A Quantitative Model for BicD2/Cargo Interactions.

作者信息

Noell Crystal R, Loftus Kyle M, Cui Heying, Grewer Christof, Kizer Megan, Debler Erik W, Solmaz Sozanne R

机构信息

Department of Chemistry , State University of New York at Binghamton , Binghamton , New York 13902 , United States.

Department of Biochemistry & Molecular Biology , Thomas Jefferson University , Philadelphia , Pennsylvania 19107 , United States.

出版信息

Biochemistry. 2018 Nov 20;57(46):6538-6550. doi: 10.1021/acs.biochem.8b00987. Epub 2018 Nov 5.

Abstract

Dynein adaptor proteins such as Bicaudal D2 (BicD2) are integral components of the dynein transport machinery, as they recognize cargoes for cell cycle-specific transport and link them to the motor complex. Human BicD2 switches from selecting secretory and Golgi-derived vesicles for transport in G1 and S phase (by recognizing Rab6), to selecting the nucleus for transport in G2 phase (by recognizing nuclear pore protein Nup358), but the molecular mechanisms governing this switch are elusive. Here, we have developed a quantitative model for BicD2/cargo interactions that integrates affinities, oligomeric states, and cellular concentrations of the reactants. BicD2 and cargo form predominantly 2:2 complexes. Furthermore, the affinity of BicD2 toward its cargo Nup358 is higher than that toward Rab6. Based on our calculations, an estimated 1000 BicD2 molecules per cell would be recruited to the nucleus through Nup358 in the absence of regulation. Notably, RanGTP is a negative regulator of the Nup358/BicD2 interaction that weakens the affinity by a factor of 10 and may play a role in averting dynein recruitment to the nucleus outside of the G2 phase. However, our quantitative model predicts that an additional negative regulator remains to be identified. In the absence of negative regulation, the affinity of Nup358 would likely be sufficient to recruit BicD2 to the nucleus in G2 phase. Our quantitative model makes testable predictions of how cellular transport events are orchestrated. These transport processes are important for brain development, cell cycle control, signaling, and neurotransmission at synapses.

摘要

诸如双尾D2(BicD2)等动力蛋白衔接蛋白是动力蛋白运输机制的重要组成部分,因为它们识别用于细胞周期特异性运输的货物并将其与动力复合体相连。人类BicD2在G1期和S期通过识别Rab6选择分泌性和高尔基体衍生的囊泡进行运输,而在G2期则通过识别核孔蛋白Nup358选择细胞核进行运输,但控制这种转换的分子机制尚不清楚。在这里,我们建立了一个BicD2/货物相互作用的定量模型,该模型整合了反应物的亲和力、寡聚状态和细胞浓度。BicD2和货物主要形成2:2复合物。此外,BicD2对其货物Nup358的亲和力高于对Rab6的亲和力。根据我们的计算,在没有调控的情况下,每个细胞估计有1000个BicD2分子会通过Nup358被招募到细胞核。值得注意的是,RanGTP是Nup358/BicD2相互作用的负调节因子,它使亲和力减弱10倍,可能在避免动力蛋白在G2期之外被招募到细胞核中发挥作用。然而,我们的定量模型预测仍有待鉴定另一种负调节因子。在没有负调控的情况下,Nup358的亲和力可能足以在G2期将BicD2招募到细胞核。我们的定量模型对细胞运输事件的编排做出了可测试的预测。这些运输过程对大脑发育、细胞周期控制、信号传导和突触处的神经传递很重要。

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