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2018年的FZB42:促进植物生长和生物防治的革兰氏阳性模式菌株。

FZB42 in 2018: The Gram-Positive Model Strain for Plant Growth Promotion and Biocontrol.

作者信息

Fan Ben, Wang Cong, Song Xiaofeng, Ding Xiaolei, Wu Liming, Wu Huijun, Gao Xuewen, Borriss Rainer

机构信息

Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, China.

Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing, China.

出版信息

Front Microbiol. 2018 Oct 16;9:2491. doi: 10.3389/fmicb.2018.02491. eCollection 2018.

Abstract

FZB42, the model strain for Gram-positive plant-growth-promoting and biocontrol rhizobacteria, has been isolated in 1998 and sequenced in 2007. In order to celebrate these anniversaries, we summarize here the recent knowledge about FZB42. In last 20 years, more than 140 articles devoted to FZB42 have been published. At first, research was mainly focused on antimicrobial compounds, apparently responsible for biocontrol effects against plant pathogens, recent research is increasingly directed to expression of genes involved in bacteria-plant interaction, regulatory small RNAs (sRNAs), and on modification of enzymes involved in synthesis of antimicrobial compounds by processes such as acetylation and malonylation. Till now, 13 gene clusters involved in non-ribosomal and ribosomal synthesis of secondary metabolites with putative antimicrobial action have been identified within the genome of FZB42. These gene clusters cover around 10% of the whole genome. Antimicrobial compounds suppress not only growth of plant pathogenic bacteria and fungi, but could also stimulate induced systemic resistance (ISR) in plants. It has been found that besides secondary metabolites also volatile organic compounds are involved in the biocontrol effect exerted by FZB42 under biotic (plant pathogens) and abiotic stress conditions. In order to facilitate easy access to the genomic data, we have established an integrating data bank 'AmyloWiki' containing accumulated information about the genes present in FZB42, available mutant strains, and other aspects of FZB42 research, which is structured similar as the famous SubtiWiki data bank.

摘要

FZB42是革兰氏阳性植物促生和生防根际细菌的模式菌株,于1998年分离出来,并于2007年完成测序。为了纪念这些周年,我们在此总结关于FZB42的最新知识。在过去20年里,已发表了140多篇关于FZB42的文章。起初,研究主要集中在抗菌化合物上,这些化合物显然对植物病原体具有生防作用,而最近的研究越来越多地转向细菌与植物相互作用中涉及的基因表达、调控小RNA(sRNA),以及通过乙酰化和丙二酰化等过程对抗菌化合物合成中涉及的酶进行修饰。到目前为止,在FZB42的基因组中已鉴定出13个参与次生代谢产物非核糖体和核糖体合成的基因簇,这些次生代谢产物具有假定的抗菌作用。这些基因簇覆盖了整个基因组的约10%。抗菌化合物不仅能抑制植物病原细菌和真菌的生长,还能刺激植物的诱导系统抗性(ISR)。已经发现,除了次生代谢产物外,挥发性有机化合物也参与了FZB42在生物(植物病原体)和非生物胁迫条件下发挥的生防作用。为了便于轻松获取基因组数据,我们建立了一个整合数据库“AmyloWiki”,其中包含了FZB42中存在的基因、可用突变菌株以及FZB42研究其他方面的累积信息,其结构与著名的SubtiWiki数据库类似。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ceb9/6198173/b6edde462ccf/fmicb-09-02491-g001.jpg

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