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MetaCyc 数据库中的代谢途径和酶。

The MetaCyc database of metabolic pathways and enzymes.

机构信息

SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA.

出版信息

Nucleic Acids Res. 2018 Jan 4;46(D1):D633-D639. doi: 10.1093/nar/gkx935.

Abstract

MetaCyc (https://MetaCyc.org) is a comprehensive reference database of metabolic pathways and enzymes from all domains of life. It contains more than 2570 pathways derived from >54 000 publications, making it the largest curated collection of metabolic pathways. The data in MetaCyc is strictly evidence-based and richly curated, resulting in an encyclopedic reference tool for metabolism. MetaCyc is also used as a knowledge base for generating thousands of organism-specific Pathway/Genome Databases (PGDBs), which are available in the BioCyc (https://BioCyc.org) and other PGDB collections. This article provides an update on the developments in MetaCyc during the past two years, including the expansion of data and addition of new features.

摘要

MetaCyc(https://MetaCyc.org)是一个综合的代谢途径和酶的参考数据库,涵盖了所有生命领域。它包含了超过 2570 条途径,来源于超过 54000 篇文献,是最大的经过精心整理的代谢途径集合。MetaCyc 中的数据是严格基于证据的,并且经过了精心整理,因此成为了代谢领域的百科全书式参考工具。MetaCyc 也被用作生成数千个特定于生物体的途径/基因组数据库(PGDB)的知识库,这些数据库可在 BioCyc(https://BioCyc.org)和其他 PGDB 集合中获得。本文提供了过去两年中 MetaCyc 的发展情况更新,包括数据的扩展和新功能的增加。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2804/5753197/9ac4cbcfb7b4/gkx935fig1.jpg

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