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1
Bacteriorhodopsin mutants containing single tyrosine to phenylalanine substitutions are all active in proton translocation.含有单个酪氨酸到苯丙氨酸取代的细菌视紫红质突变体在质子转运中均具有活性。
Proc Natl Acad Sci U S A. 1987 Aug;84(16):5595-9. doi: 10.1073/pnas.84.16.5595.
2
Structure-function studies on bacteriorhodopsin. IX. Substitutions of tryptophan residues affect protein-retinal interactions in bacteriorhodopsin.
J Biol Chem. 1989 Aug 25;264(24):14197-201.
3
Aspartic acid substitutions affect proton translocation by bacteriorhodopsin.天冬氨酸替代影响细菌视紫红质的质子转运。
Proc Natl Acad Sci U S A. 1988 Jun;85(12):4148-52. doi: 10.1073/pnas.85.12.4148.
4
Ultraviolet-visible transient spectroscopy of bacteriorhodopsin mutants. Evidence for two forms of tyrosine-185----phenylalanine.细菌视紫红质突变体的紫外-可见瞬态光谱。酪氨酸-185→苯丙氨酸两种形式的证据。
J Biol Chem. 1990 Oct 5;265(28):16978-84.
5
Structure and function in bacteriorhodopsin: the role of the interhelical loops in the folding and stability of bacteriorhodopsin.细菌视紫红质的结构与功能:螺旋间环在细菌视紫红质折叠和稳定性中的作用。
J Mol Biol. 2001 Apr 27;308(2):409-22. doi: 10.1006/jmbi.2001.4603.
6
Bacteriorhodopsin mutants containing single substitutions of serine or threonine residues are all active in proton translocation.
J Biol Chem. 1991 Apr 15;266(11):6919-27.
7
Structure-function studies on bacteriorhodopsin. X. Individual substitutions of arginine residues by glutamine affect chromophore formation, photocycle, and proton translocation.细菌视紫红质的结构-功能研究。X. 精氨酸残基被谷氨酰胺逐个取代对生色团形成、光循环和质子转运的影响。
J Biol Chem. 1989 Aug 25;264(24):14202-8.
8
Structure-function studies on bacteriorhodopsin. V. Effects of amino acid substitutions in the putative helix F.细菌视紫红质的结构-功能研究。V. 假定的F螺旋中氨基酸取代的影响。
J Biol Chem. 1987 Jul 5;262(19):9277-84.
9
Vibrational spectroscopy of bacteriorhodopsin mutants: I. Tyrosine-185 protonates and deprotonates during the photocycle.细菌视紫红质突变体的振动光谱:I. 酪氨酸-185在光循环过程中发生质子化和去质子化。
Proteins. 1988;3(4):219-29. doi: 10.1002/prot.340030403.
10
Structure-function studies on bacteriorhodopsin. VIII. Substitutions of the membrane-embedded prolines 50, 91, and 186: the effects are determined by the substituting amino acids.
J Biol Chem. 1989 Aug 25;264(24):14192-6.

引用本文的文献

1
Interdisciplinary biophysical studies of membrane proteins bacteriorhodopsin and rhodopsin.膜蛋白细菌视紫红质和视紫红质的跨学科生物物理研究。
Biophys Rev. 2022 Oct 8;15(1):111-125. doi: 10.1007/s12551-022-01003-y. eCollection 2023 Feb.
2
Photoinduced isomerization sampling of retinal in bacteriorhodopsin.细菌视紫红质中视黄醛的光致异构化采样
PNAS Nexus. 2022 Jul 1;1(3):pgac103. doi: 10.1093/pnasnexus/pgac103. eCollection 2022 Jul.
3
Engineering and Production of the Light-Driven Proton Pump Bacteriorhodopsin in 2D Crystals for Basic Research and Applied Technologies.用于基础研究和应用技术的二维晶体中光驱动质子泵细菌视紫红质的工程与生产
Methods Protoc. 2020 Jul 22;3(3):51. doi: 10.3390/mps3030051.
4
Full-Quantum chemical calculation of the absorption maximum of bacteriorhodopsin: a comprehensive analysis of the amino acid residues contributing to the opsin shift.细菌视紫红质吸收峰的全量子化学计算:对视蛋白位移贡献的氨基酸残基的综合分析。
Biophysics (Nagoya-shi). 2012 Jul 27;8:115-25. doi: 10.2142/biophysics.8.115. eCollection 2012.
5
A molecular piston mechanism of pumping protons by bacteriorhodopsin.细菌视紫红质质子泵送的分子活塞机制。
Amino Acids. 1994 Feb;7(1):1-17. doi: 10.1007/BF00808442.
6
Genetically encoded molecular tools for light-driven silencing of targeted neurons.用于光驱动靶向神经元沉默的基因编码分子工具。
Prog Brain Res. 2012;196:49-61. doi: 10.1016/B978-0-444-59426-6.00003-3.
7
Synthetic physiology strategies for adapting tools from nature for genetically targeted control of fast biological processes.合成生理学策略:从自然中借鉴工具以对快速生物过程进行基因靶向控制。
Methods Enzymol. 2011;497:425-43. doi: 10.1016/B978-0-12-385075-1.00018-4.
8
Redshift of the purple membrane absorption band and the deprotonation of tyrosine residues at high pH: Origin of the parallel photocycles of trans-bacteriorhodopsin.高 pH 值下紫膜吸收带的红移和酪氨酸残基的去质子化:反细菌视紫红质平行光循环的起源。
Biophys J. 1991 Aug;60(2):475-90. doi: 10.1016/S0006-3495(91)82074-4.
9
Nature of forces stabilizing the transmembrane protein bacteriorhodopsin in purple membrane.稳定紫膜中跨膜蛋白菌紫质的力的性质。
Biophys J. 1989 Oct;56(4):769-80. doi: 10.1016/S0006-3495(89)82724-9.
10
Electrostatic and steric interactions determine bacteriorhodopsin single-molecule biomechanics.静电和空间相互作用决定细菌视紫红质单分子生物力学。
Biophys J. 2007 Sep 15;93(6):2024-37. doi: 10.1529/biophysj.106.101469. Epub 2007 May 18.

本文引用的文献

1
Specific amino acid substitutions in bacterioopsin: Replacement of a restriction fragment in the structural gene by synthetic DNA fragments containing altered codons.细菌视紫红质中特定氨基酸的取代:用含有改变了的密码子的合成 DNA 片段替换结构基因中的限制酶片段。
Proc Natl Acad Sci U S A. 1984 Apr;81(8):2285-9. doi: 10.1073/pnas.81.8.2285.
2
Effect of iodination on the pK of Schiff base deprotonation and M 412 production in purple membrane.碘化作用对紫膜中席夫碱去质子化的pK及M 412生成的影响。
Biochem Biophys Res Commun. 1981 Nov 16;103(1):175-81. doi: 10.1016/0006-291x(81)91676-4.
3
Proton conduction in bacteriorhodopsin via a hydrogen-bonded chain with large proton polarizability.细菌视紫红质中通过具有大质子极化率的氢键链进行质子传导。
Biochem Biophys Res Commun. 1981 Jul 30;101(2):540-6. doi: 10.1016/0006-291x(81)91293-6.
4
The role of tyrosine residues in the function of bacteriorhodopsin. Specific nitration of tyrosine 26.酪氨酸残基在细菌视紫红质功能中的作用。酪氨酸26的特异性硝化作用。
Eur J Biochem. 1981 Apr;115(3):595-604. doi: 10.1111/j.1432-1033.1981.tb06244.x.
5
On the protein (tyrosine)-chromophore (protonated Schiff base) coupling in bacteriorhodopsin.关于细菌视紫红质中蛋白质(酪氨酸)-发色团(质子化席夫碱)的偶联
Proc Natl Acad Sci U S A. 1984 Nov;81(22):7083-7. doi: 10.1073/pnas.81.22.7083.
6
Reversible inhibition of the proton pump bacteriorhodopsin by modification of tyrosine 64.
J Biol Chem. 1982 Aug 25;257(16):9384-8.
7
Fourier transform infrared difference spectroscopy of bacteriorhodopsin and its photoproducts regenerated with deuterated tyrosine.细菌视紫红质及其用氘代酪氨酸再生的光产物的傅里叶变换红外差光谱。
Biochemistry. 1986 Oct 21;25(21):6524-33. doi: 10.1021/bi00369a028.
8
A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes.一种用于特异性基因的可控专一性表达的噬菌体T7 RNA聚合酶/启动子系统。
Proc Natl Acad Sci U S A. 1985 Feb;82(4):1074-8. doi: 10.1073/pnas.82.4.1074.
9
Effects of tyrosine-26 and tyrosine-64 nitration on the photoreactions of bacteriorhodopsin.酪氨酸-26和酪氨酸-64硝化对细菌视紫红质光反应的影响。
Biochemistry. 1985 Dec 17;24(26):7733-40. doi: 10.1021/bi00347a035.
10
Evidence for a tyrosine protonation change during the primary phototransition of bacteriorhodopsin at low temperature.在低温下细菌视紫红质初级光转变过程中酪氨酸质子化变化的证据。
Proc Natl Acad Sci U S A. 1986 Jan;83(2):347-51. doi: 10.1073/pnas.83.2.347.

含有单个酪氨酸到苯丙氨酸取代的细菌视紫红质突变体在质子转运中均具有活性。

Bacteriorhodopsin mutants containing single tyrosine to phenylalanine substitutions are all active in proton translocation.

作者信息

Mogi T, Stern L J, Hackett N R, Khorana H G

出版信息

Proc Natl Acad Sci U S A. 1987 Aug;84(16):5595-9. doi: 10.1073/pnas.84.16.5595.

DOI:10.1073/pnas.84.16.5595
PMID:3039495
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC298909/
Abstract

To study the possible role of the tyrosine residues in proton translocation by bacteriorhodopsin, we have replaced these residues individually by phenylalanine. The required codon changes were introduced in the bacterioopsin gene by replacement of appropriate restriction fragments by synthetic counterparts containing the desired nucleotide changes. The denatured opsin polypeptides obtained by expression of the mutant genes in Escherichia coli were purified and treated with a mixture of detergents, phospholipids, and retinal in a previously established renaturation procedure. All of the mutant proteins folded to regenerate bacteriorhodopsin-like chromophores. Three mutants with tyrosine to phenylalanine substitutions at positions 57, 83, and 185 regenerated the chromophore more slowly than the wild-type protein, and two of these mutants, Phe-57 and -83, showed slightly blue-shifted chromophores. When reconstituted into liposomes all of the mutant proteins with single Tyr----Phe substitutions pumped protons at rates and levels comparable to those of the wild-type bacteriorhodopsin. We conclude that single substitutions of tyrosine by phenylalanine do not affect folding, retinal binding, or light-dependent proton pumping in bacteriorhodopsin.

摘要

为了研究细菌视紫红质中酪氨酸残基在质子转运过程中可能发挥的作用,我们将这些残基逐个替换为苯丙氨酸。通过用含有所需核苷酸变化的合成对应片段替换适当的限制性片段,在细菌视蛋白基因中引入所需的密码子变化。通过在大肠杆菌中表达突变基因获得的变性视蛋白多肽经过纯化,并按照先前建立的复性程序用去污剂、磷脂和视黄醛的混合物进行处理。所有突变蛋白都折叠形成类似细菌视紫红质的发色团。在57、83和185位酪氨酸被苯丙氨酸取代的三个突变体,其发色团的再生速度比野生型蛋白慢,其中两个突变体Phe-57和-83的发色团略微蓝移。当重组到脂质体中时,所有单个酪氨酸被苯丙氨酸取代的突变蛋白泵送质子的速率和水平与野生型细菌视紫红质相当。我们得出结论,苯丙氨酸对酪氨酸的单个取代不会影响细菌视紫红质的折叠、视黄醛结合或光依赖性质子泵送。