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多样性-面积关系(DAR):扩展用于生物多样性和生物地理学分析的经典种-面积关系(SAR)。

DAR (diversity-area relationship): Extending classic SAR (species-area relationship) for biodiversity and biogeography analyses.

作者信息

Ma Zhanshan Sam

机构信息

Computational Biology and Medical Ecology Lab Kunming Institute of Zoology Chinese Academy of Sciences Kunming China.

Center for Excellence in Animal Evolution and Genetics Chinese Academy of Sciences Kunming China.

出版信息

Ecol Evol. 2018 Sep 25;8(20):10023-10038. doi: 10.1002/ece3.4425. eCollection 2018 Oct.

Abstract

I extend the classic SAR, which has achieved status of ecological law and plays a critical role in global biodiversity and biogeography analyses, to general DAR (diversity-area relationship). The extension was aimed to remedy a serious application limitation of the traditional SAR that only addressed one aspect of biodiversity scaling-species richness scaling over space, but ignoring species abundance information. The extension was further inspired by a recent consensus that Hill numbers offer the most appropriate measures for alpha-diversity and multiplicative beta-diversity. In particular, Hill numbers are essentially a series of Renyi's entropy values weighted differently along the rare-common-dominant spectrum of species abundance distribution and are in the units of effective number of species (or species equivalents such as OTUs). I therefore postulate that Hill numbers should follow the same or similar law of the traditional SAR. I test the postulation with the American gut microbiome project (AGP) dataset of 1,473 healthy North American individuals. I further propose three new concepts and develop their statistical estimation formulae based on the new DAR extension, including: (i) DAR profile- relationship (DAR scaling parameter at different diversity order ), (ii) PDO (pair-wise diversity overlap) profile- relationship (PDO parameter at order , and (iii) MAD (maximal accrual diversity: ) profile- -. While the classic SAR is a special case of our new DAR profile, the PDO and MAD profiles offer novel tools for analyzing biodiversity (including alpha-diversity and beta-diversity) and biogeography over space.

摘要

我将经典的种 - 面积关系(SAR)扩展到一般的多样性 - 面积关系(DAR)。经典的SAR已成为生态法则,在全球生物多样性和生物地理学分析中发挥着关键作用。这种扩展旨在弥补传统SAR的一个严重应用局限性,即传统SAR仅解决了生物多样性缩放的一个方面——物种丰富度在空间上的缩放,而忽略了物种丰度信息。这种扩展还受到最近一种共识的启发,即希尔数为α多样性和乘法β多样性提供了最合适的度量。具体而言,希尔数本质上是一系列沿物种丰度分布的稀有 - 常见 - 优势谱加权不同的雷尼熵值,并且以有效物种数(或物种等效物,如操作分类单元)为单位。因此,我推测希尔数应遵循与传统SAR相同或相似的规律。我使用来自1473名健康北美个体的美国肠道微生物组项目(AGP)数据集对这一推测进行了检验。我还基于新的DAR扩展提出了三个新概念并开发了它们的统计估计公式,包括:(i)DAR谱 - 关系(不同多样性阶数下的DAR缩放参数),(ii)成对多样性重叠(PDO)谱 - 关系(阶数 下的PDO参数),以及(iii)最大累积多样性(MAD: )谱 - 。虽然经典的SAR是我们新的DAR谱的一个特殊情况,但PDO和MAD谱为分析空间上的生物多样性(包括α多样性和β多样性)和生物地理学提供了新工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dff/6206192/611493ecc320/ECE3-8-10023-g001.jpg

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