Suppr超能文献

牛脂肪生成分化过程中的全转录组分析及甲状腺素运载蛋白基因在脂肪生成中的作用

Global Transcriptome Analysis During Adipogenic Differentiation and Involvement of Transthyretin Gene in Adipogenesis in Cattle.

作者信息

Cai Hanfang, Li Mingxun, Sun Xiaomei, Plath Martin, Li Congjun, Lan Xianyong, Lei Chuzhao, Huang Yongzhen, Bai Yueyu, Qi Xinglei, Lin Fengpeng, Chen Hong

机构信息

College of Animal Science and Technology, Northwest A&F University, Yangling, China.

College of Animal Science and Technology, Yangzhou University, Yangzhou, China.

出版信息

Front Genet. 2018 Oct 18;9:463. doi: 10.3389/fgene.2018.00463. eCollection 2018.

Abstract

Adipose tissue plays central role in determining the gustatory quality of beef, but traditional Chinese beef cattle have low levels of fat content. We applied RNA-seq to study the molecular mechanisms underlying adipocyte differentiation in Qinchuan cattle. A total of 18,283 genes were found to be expressed in preadipocytes and mature adipocytes, respectively. 470 of which were significantly differentially expressed genes (DEGs) [false discovery rate (FDR) values < 0.05 and fold change ≥ 2]. In addition, 4534 alternative splicing (AS) events and 5153 AS events were detected in preadipocytes and adipocytes, respectively. We constructed a protein interaction network, which suggested that collagen plays an important role during bovine adipogenic differentiation. We characterized the function of the most down-regulated DEG ( < 0.001) among genes we have detected by qPCR, namely, the transthyretin (TTR) gene. Overexpression of TTR appears to promote the expression of the peroxisome proliferator activated receptor γ (PPARγ) ( < 0.05) and fatty acid binding Protein 4 (FABP4) ( < 0.05). Hence, TTR appears to be involved in the regulation of bovine adipogenic differentiation. Our study represents the comprehensive approach to explore bovine adipocyte differentiation using transcriptomic data and reports an involvement of TTR during bovine adipogenic differentiation. Our results provide novel insights into the molecular mechanisms underlying bovine adipogenic differentiation.

摘要

脂肪组织在决定牛肉的味觉品质方面起着核心作用,但中国传统肉牛的脂肪含量较低。我们应用RNA测序技术研究秦川牛脂肪细胞分化的分子机制。共发现18283个基因分别在前脂肪细胞和成熟脂肪细胞中表达。其中470个是显著差异表达基因(DEGs)[错误发现率(FDR)值<0.05且变化倍数≥2]。此外,在前脂肪细胞和脂肪细胞中分别检测到4534个可变剪接(AS)事件和5153个AS事件。我们构建了一个蛋白质相互作用网络,表明胶原蛋白在牛脂肪生成分化过程中起重要作用。我们通过qPCR对检测到的基因中下调最显著的DEG(<0.001),即甲状腺素运载蛋白(TTR)基因的功能进行了表征。TTR的过表达似乎促进了过氧化物酶体增殖物激活受体γ(PPARγ)(<0.05)和脂肪酸结合蛋白4(FABP4)(<0.05)的表达。因此,TTR似乎参与了牛脂肪生成分化的调控。我们的研究代表了一种利用转录组数据探索牛脂肪细胞分化的综合方法,并报道了TTR在牛脂肪生成分化过程中的作用。我们的结果为牛脂肪生成分化的分子机制提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9378/6200853/4c749c8403b2/fgene-09-00463-g001.jpg

相似文献

2
RNA-Seq Analysis Reveals a Positive Role of HTR2A in Adipogenesis in Yan Yellow Cattle.
Int J Mol Sci. 2018 Jun 13;19(6):1760. doi: 10.3390/ijms19061760.
4
RNA-Seq explores the functional role of the fibroblast growth factor 10 gene in bovine adipocytes differentiation.
Anim Biosci. 2024 May;37(5):929-943. doi: 10.5713/ab.23.0185. Epub 2023 Nov 1.
6
RNA-seq reveal role of bovine TORC2 in the regulation of adipogenesis.
Arch Biochem Biophys. 2020 Feb 15;680:108236. doi: 10.1016/j.abb.2019.108236. Epub 2019 Dec 29.
7
MiR-378 Plays an Important Role in the Differentiation of Bovine Preadipocytes.
Cell Physiol Biochem. 2015;36(4):1552-62. doi: 10.1159/000430318.
10
Overexpression of Promotes Lipid Metabolism in Bovine Adipocytes.
Animals (Basel). 2020 Oct 22;10(11):1944. doi: 10.3390/ani10111944.

引用本文的文献

1
Long non-coding RNA (LncRNA) and epigenetic factors: their role in regulating the adipocytes in bovine.
Front Genet. 2024 Oct 3;15:1405588. doi: 10.3389/fgene.2024.1405588. eCollection 2024.
3
CircSSBP2 acts as a MiR-2400 sponge to promote intramuscular preadipocyte proliferation by regulating NDRG1.
Mol Genet Genomics. 2024 May 3;299(1):48. doi: 10.1007/s00438-024-02138-1.
6
RNA-Seq explores the functional role of the fibroblast growth factor 10 gene in bovine adipocytes differentiation.
Anim Biosci. 2024 May;37(5):929-943. doi: 10.5713/ab.23.0185. Epub 2023 Nov 1.
7
Transcriptional analysis of microRNAs related to unsaturated fatty acid synthesis by interfering bovine adipocyte ACSL1 gene.
Front Genet. 2022 Sep 26;13:994806. doi: 10.3389/fgene.2022.994806. eCollection 2022.
10
Hypertrophy of Adipose Tissues in Quail Embryos by Injection of All- Retinoic Acid.
Front Physiol. 2021 May 21;12:681562. doi: 10.3389/fphys.2021.681562. eCollection 2021.

本文引用的文献

1
Transcriptome analysis of mRNA and microRNAs in intramuscular fat tissues of castrated and intact male Chinese Qinchuan cattle.
PLoS One. 2017 Oct 26;12(10):e0185961. doi: 10.1371/journal.pone.0185961. eCollection 2017.
4
Ectopical expression of FABP4 gene can induce bovine muscle-derived stem cells adipogenesis.
Biochem Biophys Res Commun. 2017 Jan 8;482(2):352-358. doi: 10.1016/j.bbrc.2016.11.067. Epub 2016 Nov 14.
5
Genome-wide analysis of alternative splicing during human heart development.
Sci Rep. 2016 Oct 18;6:35520. doi: 10.1038/srep35520.
6
Dynamics of protein secretion during adipocyte differentiation.
FEBS Open Bio. 2016 Jun 15;6(8):816-26. doi: 10.1002/2211-5463.12091. eCollection 2016 Aug.
8
Transcriptional and post-transcriptional control of adipocyte differentiation by Jumonji domain-containing protein 6.
Nucleic Acids Res. 2015 Sep 18;43(16):7790-804. doi: 10.1093/nar/gkv645. Epub 2015 Jun 27.
10
Transthyretin: a multifaceted protein.
Biomol Concepts. 2014 Mar;5(1):45-54. doi: 10.1515/bmc-2013-0038.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验