Cai Hanfang, Li Mingxun, Sun Xiaomei, Plath Martin, Li Congjun, Lan Xianyong, Lei Chuzhao, Huang Yongzhen, Bai Yueyu, Qi Xinglei, Lin Fengpeng, Chen Hong
College of Animal Science and Technology, Northwest A&F University, Yangling, China.
College of Animal Science and Technology, Yangzhou University, Yangzhou, China.
Front Genet. 2018 Oct 18;9:463. doi: 10.3389/fgene.2018.00463. eCollection 2018.
Adipose tissue plays central role in determining the gustatory quality of beef, but traditional Chinese beef cattle have low levels of fat content. We applied RNA-seq to study the molecular mechanisms underlying adipocyte differentiation in Qinchuan cattle. A total of 18,283 genes were found to be expressed in preadipocytes and mature adipocytes, respectively. 470 of which were significantly differentially expressed genes (DEGs) [false discovery rate (FDR) values < 0.05 and fold change ≥ 2]. In addition, 4534 alternative splicing (AS) events and 5153 AS events were detected in preadipocytes and adipocytes, respectively. We constructed a protein interaction network, which suggested that collagen plays an important role during bovine adipogenic differentiation. We characterized the function of the most down-regulated DEG ( < 0.001) among genes we have detected by qPCR, namely, the transthyretin (TTR) gene. Overexpression of TTR appears to promote the expression of the peroxisome proliferator activated receptor γ (PPARγ) ( < 0.05) and fatty acid binding Protein 4 (FABP4) ( < 0.05). Hence, TTR appears to be involved in the regulation of bovine adipogenic differentiation. Our study represents the comprehensive approach to explore bovine adipocyte differentiation using transcriptomic data and reports an involvement of TTR during bovine adipogenic differentiation. Our results provide novel insights into the molecular mechanisms underlying bovine adipogenic differentiation.
脂肪组织在决定牛肉的味觉品质方面起着核心作用,但中国传统肉牛的脂肪含量较低。我们应用RNA测序技术研究秦川牛脂肪细胞分化的分子机制。共发现18283个基因分别在前脂肪细胞和成熟脂肪细胞中表达。其中470个是显著差异表达基因(DEGs)[错误发现率(FDR)值<0.05且变化倍数≥2]。此外,在前脂肪细胞和脂肪细胞中分别检测到4534个可变剪接(AS)事件和5153个AS事件。我们构建了一个蛋白质相互作用网络,表明胶原蛋白在牛脂肪生成分化过程中起重要作用。我们通过qPCR对检测到的基因中下调最显著的DEG(<0.001),即甲状腺素运载蛋白(TTR)基因的功能进行了表征。TTR的过表达似乎促进了过氧化物酶体增殖物激活受体γ(PPARγ)(<0.05)和脂肪酸结合蛋白4(FABP4)(<0.05)的表达。因此,TTR似乎参与了牛脂肪生成分化的调控。我们的研究代表了一种利用转录组数据探索牛脂肪细胞分化的综合方法,并报道了TTR在牛脂肪生成分化过程中的作用。我们的结果为牛脂肪生成分化的分子机制提供了新的见解。