From the Department of Bioengineering.
Chemistry and Chemical Biology Graduate Program.
J Biol Chem. 2019 Jan 11;294(2):439-452. doi: 10.1074/jbc.RA118.004407. Epub 2018 Nov 20.
The inflammasome is a multiprotein complex necessary for the onset of inflammation. The adapter protein ASC assembles inflammasome components by acting as a molecular glue between danger-signal sensors and procaspase-1. The assembly is mediated by ASC self-association and protein interactions via its two Death Domains, PYD and CARD. Truncated versions of ASC have been shown to form filaments, but information on the filaments formed by full-length ASC is needed to construct a meaningful model of inflammasome assembly. To gain insights into this system, we used a combination of transmission EM, NMR, and computational analysis to investigate intact ASC structures. We show that ASC forms ∼6-7-nm-wide filaments that stack laterally to form bundles. The structural characteristics and dimensions of the bundles indicate that both PYD and CARD are integral parts of the filament. A truncated version of ASC with only the CARD domain (ASC) forms different filaments (∼3-4-nm width), providing further evidence that both domains work in concert in filament assembly. Ring-shaped protein particles bound to pre-existing filaments match the size of ASC dimer structures generated by NMR-based protein docking, suggesting that the ASC dimer could be a basic building block for filament formation. Solution NMR binding studies identified the protein surfaces involved in the ASC-ASC interaction. These data provide new insights into the structural underpinnings of the inflammasome and should inform future efforts to interrogate this important biological system.
炎症小体是一种多蛋白复合物,是炎症发生所必需的。衔接蛋白 ASC 通过在危险信号传感器和前胱天蛋白酶-1 之间充当分子胶,组装炎症小体成分。组装是由 ASC 自我缔合和通过其两个死亡结构域 PYD 和 CARD 之间的蛋白相互作用介导的。已经证明截断的 ASC 形成纤维,但需要全长 ASC 形成的纤维的信息来构建炎症小体组装的有意义模型。为了深入了解该系统,我们使用透射电子显微镜、NMR 和计算分析的组合来研究完整的 ASC 结构。我们表明 ASC 形成约 6-7nm 宽的纤维,这些纤维侧向堆叠形成束。束的结构特征和尺寸表明 PYD 和 CARD 都是纤维的组成部分。只有 CARD 结构域(ASC)的截断 ASC 形成不同的纤维(约 3-4nm 宽),进一步证明两个结构域在纤维组装中协同工作。与预先存在的纤维结合的环形蛋白颗粒与基于 NMR 的蛋白对接生成的 ASC 二聚体结构大小匹配,表明 ASC 二聚体可能是纤维形成的基本构建块。溶液 NMR 结合研究确定了参与 ASC-ASC 相互作用的蛋白表面。这些数据为炎症小体的结构基础提供了新的见解,并应指导未来研究这个重要的生物系统。