European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
Open Targets, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
Nucleic Acids Res. 2019 Jan 8;47(D1):D1056-D1065. doi: 10.1093/nar/gky1133.
The Open Targets Platform integrates evidence from genetics, genomics, transcriptomics, drugs, animal models and scientific literature to score and rank target-disease associations for drug target identification. The associations are displayed in an intuitive user interface (https://www.targetvalidation.org), and are available through a REST-API (https://api.opentargets.io/v3/platform/docs/swagger-ui) and a bulk download (https://www.targetvalidation.org/downloads/data). In addition to target-disease associations, we also aggregate and display data at the target and disease levels to aid target prioritisation. Since our first publication two years ago, we have made eight releases, added new data sources for target-disease associations, started including causal genetic variants from non genome-wide targeted arrays, added new target and disease annotations, launched new visualisations and improved existing ones and released a new web tool for batch search of up to 200 targets. We have a new URL for the Open Targets Platform REST-API, new REST endpoints and also removed the need for authorisation for API fair use. Here, we present the latest developments of the Open Targets Platform, expanding the evidence and target-disease associations with new and improved data sources, refining data quality, enhancing website usability, and increasing our user base with our training workshops, user support, social media and bioinformatics forum engagement.
Open Targets 平台整合了遗传学、基因组学、转录组学、药物、动物模型和科学文献的证据,对药物靶点识别的目标疾病关联进行评分和排名。关联以直观的用户界面展示(https://www.targetvalidation.org),并通过 REST-API(https://api.opentargets.io/v3/platform/docs/swagger-ui)和批量下载(https://www.targetvalidation.org/downloads/data)提供。除了目标疾病关联,我们还在目标和疾病层面聚合和显示数据,以帮助目标优先级排序。自两年前首次发布以来,我们已经发布了八个版本,增加了新的目标疾病关联数据源,开始包含来自非全基因组靶向阵列的因果遗传变异,增加了新的目标和疾病注释,推出了新的可视化效果并改进了现有的可视化效果,以及发布了一个新的用于批量搜索多达 200 个目标的网络工具。我们的 Open Targets Platform REST-API 有了新的 URL,新的 REST 端点,并取消了 API 公平使用的授权要求。在此,我们展示了 Open Targets 平台的最新进展,通过新的和改进的数据来源扩展了证据和目标疾病关联,改进了数据质量,增强了网站可用性,并通过培训研讨会、用户支持、社交媒体和生物信息学论坛参与,增加了用户群。