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在Physcomitrella patens 中工程模块化二萜生物合成途径。

Engineering modular diterpene biosynthetic pathways in Physcomitrella patens.

机构信息

Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.

Wisconsin Energy Institute, 1552 University Ave, Madison, WI, 53726, USA.

出版信息

Planta. 2019 Jan;249(1):221-233. doi: 10.1007/s00425-018-3053-0. Epub 2018 Nov 23.

DOI:10.1007/s00425-018-3053-0
PMID:30470899
Abstract

Modular assembly and heterologous expression in the moss Physcomitrella patens of pairs of diterpene synthases results in accumulation of modern land plant diterpenoids. Physcomitrella patens is a representative of the ancient bryophyte plant lineage with a genome size of 511 Mb, dominant haploid life cycle and limited chemical and metabolic complexity. For these plants, exceptional capacity for genome editing through homologous recombination is met with recently demonstrated in vivo assembly of multiple heterologous DNA fragments. These traits earlier made P. patens an attractive choice as a biotechnological chassis for photosynthesis-driven production of recombinant peptides. The lack of diterpene gibberellic acid phytohormones in P. patens combined with the recent targeted disruption of the single bifunctional diterpene synthase yielded lines devoid of endogenous diterpenoid metabolites and well-suited for engineering of terpenoid production. Here, we mimicked the modular nature of diterpene biosynthetic pathways found in modern land plants by developing a flexible pipeline to install three combinations of class II and class I diterpene synthases in P. patens to access industrially relevant diterpene biomaterials. In addition to a well-established neutral locus for targeted integration, we also explored loci created by a class of Long Terminal Repeat Retrotransposon present at moderate number in the genome of P. patens. Assembly of the pathways and production of the enzymes from the neutral locus led to accumulation of diterpenes matching the reported activities in the angiosperm sources. In contrast, insights gained with the retrotransposon loci indicate their suitability for targeting, but reveal potentially inherent complications which may require adaptation of the experimental design.

摘要

在藓类植物Physcomitrella patens 中进行模块化组装和异源表达两对二萜合酶导致现代陆地植物二萜的积累。Physcomitrella patens 是古老的苔藓植物谱系的代表,具有 511Mb 的基因组大小、占优势的单倍体生命周期和有限的化学和代谢复杂性。对于这些植物,通过同源重组进行基因组编辑的能力非常出色,最近已经证明可以在体内组装多个异源 DNA 片段。这些特性使得 P. patens 成为一种有吸引力的生物技术底盘,用于通过光合作用驱动重组肽的生产。P. patens 缺乏二萜赤霉素植物激素,加上最近靶向破坏单个双功能二萜合酶,产生了缺乏内源性二萜代谢物的品系,非常适合萜烯类生产的工程改造。在这里,我们通过开发一种灵活的管道,模拟了现代陆地植物中二萜生物合成途径的模块化性质,在 P. patens 中安装了三类 II 类和 I 类二萜合酶,以获得工业相关的二萜生物材料。除了一个用于靶向整合的成熟中性位点外,我们还探索了在 P. patens 基因组中中等数量存在的一类长末端重复反转录转座子创造的位点。途径的组装和从中性位点产生的酶导致积累了与被子植物来源报道的活性相匹配的二萜。相比之下,从反转录转座子位点获得的见解表明它们适合靶向,但揭示了潜在的固有复杂性,可能需要对实验设计进行调整。

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2
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.Physcomitrella patens 染色体级别的组装揭示了苔藓植物基因组的结构和进化。
Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801.
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Stable Production of the Antimalarial Drug Artemisinin in the Moss .在苔藓中稳定生产抗疟药物青蒿素
微 RNA 在非维管束植物中的调控作用:综述
Planta. 2021 Aug 23;254(3):57. doi: 10.1007/s00425-021-03707-z.
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In vivo assembly of DNA-fragments in the moss, Physcomitrella patens.在小立碗藓(Physcomitrella patens)中DNA片段的体内组装
Sci Rep. 2016 Apr 29;6:25030. doi: 10.1038/srep25030.
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