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单点突变揭示了在生产非天然氨基酸中对 Chromobacterium violaceum 转氨酶活性重要的氨基酸残基。

Single point mutations reveal amino acid residues important for Chromobacterium violaceum transaminase activity in the production of unnatural amino acids.

机构信息

UCD Earth Institute and School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland.

BEACON - Bioeconomy Research Centre, Ireland, University College Dublin, Belfield, Dublin 4, Ireland.

出版信息

Sci Rep. 2018 Nov 26;8(1):17397. doi: 10.1038/s41598-018-35688-7.

DOI:10.1038/s41598-018-35688-7
PMID:30478262
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6255834/
Abstract

Unnatural amino acids (UAAs) are chiral amines with high application potential in drug discovery and synthesis of other valuable chemicals. Biocatalysis offers the possibility to synthesise novel optically pure UAAs with different physical and chemical properties. While the biocatalytic potential of transaminases in the synthesis of UAAs has been demonstrated, there is still a need to improve the activity with non-native substrates and to understand which amino acids residues are important for activity with these UAAs. Using a rational design approach, six variants of Chromobacterium violaceum DSM30191 transaminase (CV_TA) carrying a single and one variant carrying two substitutions were generated. Among the variants with a single substitution, CV_Y168F showed a 2 to 2.6-fold increased affinity for 2-oxooctanoic acid (2-OOA) and 3-oxobutyric acid (3-OBA) methyl ester used to synthesise an α- and β-UAA. Analysis of the first half of the transaminase reaction showed no change in the activity with the donor (S)-1-phenylethylamine. The combination of W60C and Y168F substitutions improved the CV_TA affinity for 2-OOA 10-fold compared to the wild type. Other substitutions showed no change, or reduced activity with the tested substrates. Our findings provide structural information on CV_TA and demonstrate the potential of rational design for biosynthesis of UAAs.

摘要

非天然氨基酸(UAAs)是具有高应用潜力的手性胺,可用于药物发现和其他有价值化学品的合成。生物催化为合成具有不同物理和化学性质的新型光学纯 UAAs 提供了可能性。虽然转氨酶在 UAAs 合成中的生物催化潜力已经得到了证明,但仍需要提高对非天然底物的活性,并了解哪些氨基酸残基对这些 UAAs 的活性很重要。本研究采用合理的设计方法,生成了六个携带单个取代和一个携带两个取代的 Chromobacterium violaceum DSM30191 转氨酶(CV_TA)变体。在携带单个取代的变体中,CV_Y168F 对用于合成 α-和 β-UAA 的 2-氧代辛酸(2-OOA)和 3-氧代丁酸(3-OBA)甲酯的亲和力提高了 2 到 2.6 倍。对转氨酶反应的前半部分的分析表明,供体(S)-1-苯乙胺的活性没有变化。与野生型相比,W60C 和 Y168F 取代的组合使 CV_TA 对 2-OOA 的亲和力提高了 10 倍。其他取代没有改变,或对测试的底物的活性降低。我们的研究结果提供了 CV_TA 的结构信息,并证明了合理设计在 UAAs 生物合成中的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/85e901852319/41598_2018_35688_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/1fb584b54c2e/41598_2018_35688_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/3d7206a4a4a4/41598_2018_35688_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/3c331c1c1a7b/41598_2018_35688_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/a6f8c070bde4/41598_2018_35688_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/85e901852319/41598_2018_35688_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/1fb584b54c2e/41598_2018_35688_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/3d7206a4a4a4/41598_2018_35688_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/3c331c1c1a7b/41598_2018_35688_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/a6f8c070bde4/41598_2018_35688_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e391/6255834/85e901852319/41598_2018_35688_Fig5_HTML.jpg

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