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人胰岛中环状RNA的细胞类型选择性表达

Cell Type-Selective Expression of Circular RNAs in Human Pancreatic Islets.

作者信息

Kaur Simranjeet, Mirza Aashiq H, Pociot Flemming

机构信息

Steno Diabetes Center Copenhagen, 2820 Gentofte, Denmark.

Weill Cornell Medicine, Department of Pharmacology, New York, NY 10065, USA.

出版信息

Noncoding RNA. 2018 Nov 27;4(4):38. doi: 10.3390/ncrna4040038.

Abstract

Understanding distinct cell-type specific gene expression in human pancreatic islets is important for developing islet regeneration strategies and therapies to improve β-cell function in type 1 diabetes (T1D). While numerous transcriptome-wide studies on human islet cell-types have focused on protein-coding genes, the non-coding repertoire, such as long non-coding RNA, including circular RNAs, remains mostly unexplored. Here, we explored transcriptional landscape of human α-, β-, and exocrine cells from published total RNA sequencing (RNA-seq) datasets to identify circular RNAs (circRNAs). Our analysis revealed that circRNAs are highly abundant in both α- and β-cells. We identified 10,830 high-confidence circRNAs expressed in human α-, β-, and exocrine cells. The most highly expressed candidates were , , and across the three cell-types. Alternate circular isoforms were observed for circRNAs in the three cell-types, indicative of potential distinct functions. Highly selective α- and β-cell circRNAs were identified, which is suggestive of their potential role in regulating β-cell function.

摘要

了解人类胰岛中不同细胞类型特异性基因表达对于制定胰岛再生策略和改善1型糖尿病(T1D)中β细胞功能的治疗方法至关重要。虽然许多关于人类胰岛细胞类型的全转录组研究都集中在蛋白质编码基因上,但非编码基因库,如包括环状RNA在内的长链非编码RNA,仍大多未被探索。在这里,我们从已发表的总RNA测序(RNA-seq)数据集中探索了人类α细胞、β细胞和外分泌细胞的转录图谱,以鉴定环状RNA(circRNA)。我们的分析表明,circRNA在α细胞和β细胞中都高度丰富。我们在人类α细胞、β细胞和外分泌细胞中鉴定出10830个高可信度的circRNA。在这三种细胞类型中,表达量最高的候选circRNA是 、 和 。在这三种细胞类型中观察到circRNA的可变环状异构体,这表明它们可能具有不同的功能。我们鉴定出了高度选择性的α细胞和β细胞circRNA,这表明它们在调节β细胞功能方面可能发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/46d1/6316812/6848ab6df507/ncrna-04-00038-g001.jpg

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