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氯膦酸二钠抑制自噬诱导胰腺癌的 ceRNA 网络预测:基于差异表达 circRNA、lncRNA、miRNA 和 mRNA 的研究。

Potential ceRNA networks involved in autophagy suppression of pancreatic cancer caused by chloroquine diphosphate: A study based on differentially‑expressed circRNAs, lncRNAs, miRNAs and mRNAs.

机构信息

Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530021, P.R. China.

Department of Medical Ultrasonics, First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530021, P.R. China.

出版信息

Int J Oncol. 2019 Feb;54(2):600-626. doi: 10.3892/ijo.2018.4660. Epub 2018 Dec 10.

DOI:10.3892/ijo.2018.4660
PMID:30570107
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6317664/
Abstract

Autophagy has been reported to be involved in the occurrence and development of pancreatic cancer. However, the mechanism of autophagy‑associated non‑coding RNAs (ncRNAs) in pancreatic cancer remains largely unknown. In the present study, microarrays were used to detect differential expression of mRNAs, microRNAs (miRNAs), long ncRNAs (lncRNAs) and circular RNAs (circRNAs) post autophagy suppression by chloroquine diphosphate in PANC‑1 cells. Collectively, 3,966 mRNAs, 3,184 lncRNAs and 9,420 circRNAs were differentially expressed. Additionally, only two miRNAs (hsa‑miR‑663a‑5p and hsa‑miR‑154‑3p) were underexpressed in the PANC‑1 cells in the autophagy‑suppression group. Furthermore, miR‑663a‑5p with 9 circRNAs, 8 lncRNAs and 46 genes could form a prospective ceRNA network associated with autophagy in pancreatic cancer cells. In addition, another ceRNA network containing miR‑154‑3p, 5 circRNAs, 2 lncRNAs and 11 genes was also constructed. The potential multiple ceRNA, miRNA and mRNA associations may serve pivotal roles in the autophagy of pancreatic cancer cells, which lays the theoretical foundation for subsequent investigations on pancreatic cancer.

摘要

自噬被报道参与胰腺癌的发生和发展。然而,自噬相关非编码 RNA(ncRNA)在胰腺癌中的作用机制在很大程度上尚不清楚。在本研究中,使用微阵列检测了氯喹二磷酸盐抑制自噬后 PANC-1 细胞中 mRNA、微小 RNA(miRNA)、长链非编码 RNA(lncRNA)和环状 RNA(circRNA)的差异表达。总的来说,有 3966 个 mRNAs、3184 个 lncRNAs 和 9420 个 circRNAs 表达差异。此外,在自噬抑制组中,PANC-1 细胞中只有两个 miRNA(hsa-miR-663a-5p 和 hsa-miR-154-3p)表达下调。此外,miR-663a-5p 与 9 个 circRNAs、8 个 lncRNAs 和 46 个基因可以形成与胰腺癌细胞自噬相关的有前景的 ceRNA 网络。此外,还构建了另一个包含 miR-154-3p、5 个 circRNAs、2 个 lncRNAs 和 11 个基因的 ceRNA 网络。潜在的多个 ceRNA、miRNA 和 mRNA 关联可能在胰腺癌细胞的自噬中发挥关键作用,为后续的胰腺癌研究奠定了理论基础。

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