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利用Illumina下一代测序技术获得的北极孔斯峡湾真菌群落宏基因组数据。

Metagenomic data of fungal community in Kongsfjorden, Arctic using Illumina next generation sequencing.

作者信息

Kabeer Farha Arakkaveettil, Jabir T, Krishnan K P, Abdulla Mohamed Hatha

机构信息

Department of Marine Biology, Microbiology & Biochemistry, School of Marine Sciences, Cochin University of Science and Technology (CUSAT), Kochi, India.

National Centre for Polar and Ocean Research, Headland Sada, Vasco-da-Gama, Goa, India.

出版信息

Data Brief. 2018 Dec 13;22:195-198. doi: 10.1016/j.dib.2018.12.026. eCollection 2019 Feb.

DOI:10.1016/j.dib.2018.12.026
PMID:30581925
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6301978/
Abstract

The data represents the diversity and distribution of fungal communities in Kongsfjorden, Arctic. The metagenomic DNA analysis was performed using next generation sequencing technology (Illumina MiSeq). Sequence data from amplified internal transcribed spacers (ITS) 2 region with fungal-specific primers exposed 83,417 sequences belonging to 7 operational taxonomic units (OTUs). Five of these OTUs belonged to Ascomycota, and one each to Basidiomycota and unclassified group. and were the different genera identified and they belonged to the fungal orders and The data explored the presence of important fungal communities in the Arctic marine ecosystem. Metagenome data is now available at NCBI under the Sequence Read Archive (SRA) database with accession no. SRP152688.

摘要

这些数据代表了北极孔斯峡湾真菌群落的多样性和分布情况。宏基因组DNA分析采用了下一代测序技术(Illumina MiSeq)。使用真菌特异性引物扩增内部转录间隔区(ITS)2区域获得的序列数据显示,共有83417条序列,属于7个操作分类单元(OTU)。其中5个OTU属于子囊菌门,1个属于担子菌门,1个属于未分类组。已鉴定出的不同属为 和 ,它们分别属于真菌目 和 。这些数据探索了北极海洋生态系统中重要真菌群落的存在情况。宏基因组数据现已在NCBI的序列读取存档(SRA)数据库中提供,登录号为SRP152688。

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本文引用的文献

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