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通过Illumina HiSeq估算的马里亚纳海沟海水中的真菌群落分析。

Fungal community analysis in seawater of the Mariana Trench as estimated by Illumina HiSeq.

作者信息

Wang Zhi-Peng, Liu Zeng-Zhi, Wang Yi-Lin, Bi Wang-Hua, Liu Lu, Wang Hai-Ying, Zheng Yuan, Zhang Lin-Lin, Hu Shu-Gang, Xu Shan-Shan, Zhang Peng

机构信息

Key Laboratory of Sustainable Development of Polar Fishery, Ministry of Agriculture and Rural Affairs, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences Qingdao 266071 China.

School of Medicine and Pharmacy, Ocean University of China Qingdao 266003 China

出版信息

RSC Adv. 2019 Feb 28;9(12):6956-6964. doi: 10.1039/c8ra10142f. eCollection 2019 Feb 22.

Abstract

This study assessed the diversity and distribution of fungal communities in thirteen marine seawater samples from four sites (L1, L3, L4 and L7) of the Mariana Trench, with a depth range of 1000-4000 meters, using Illumine Hiseq sequencing with fungal-specific primers targeting the internal transcribed spacer (ITS) region of the ribosomal rRNA gene. Sedimentary fungal communities showed high diversity with 209 880 reads belonging to 91 operational taxonomic units (OTUs). Of these OTUs, 45 belonged to the Ascomycota, 37 to Basidiomycota, 3 to Chytridiomycota, 1 to Glomeromycota, 1 to Cryptomycota, and 4 to unknown fungi. The major fungal orders included Saccharomycetales and Sporidiobolales. The commonly found fungal genera were , and . These results suggest the existence of diverse fungal communities in the Mariana Trench marine seawater, which can be considered as a useful community model for further ecological and evolutionary study of fungi in the trench.

摘要

本研究利用针对核糖体rRNA基因内部转录间隔区(ITS)的真菌特异性引物,通过Illumine Hiseq测序,评估了来自马里亚纳海沟四个站点(L1、L3、L4和L7)的13个海洋海水样本中真菌群落的多样性和分布,这些样本深度范围为1000 - 4000米。沉积真菌群落显示出高度多样性,有209880条 reads属于91个操作分类单元(OTU)。在这些OTU中,45个属于子囊菌门,37个属于担子菌门,3个属于壶菌门,1个属于球囊菌门,1个属于隐真菌门,4个属于未知真菌。主要的真菌目包括酵母目和掷孢酵母目。常见的真菌属为 、 和 。这些结果表明马里亚纳海沟海洋海水中存在多样的真菌群落,可被视为进一步研究该海沟真菌生态和进化的有用群落模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68a4/9061085/a20a47f86f70/c8ra10142f-f1.jpg

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