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小角散射和结构生物学:数据质量和模型验证。

Small Angle Scattering and Structural Biology: Data Quality and Model Validation.

机构信息

School of Life and Environmental Sciences, The University of Sydney, NSW, Australia.

Department of Chemistry, University of Utah, Salt Lake City, UT, USA.

出版信息

Adv Exp Med Biol. 2018;1105:77-100. doi: 10.1007/978-981-13-2200-6_7.

Abstract

This chapter provides a brief review of the current state-of-the-art in small-angle scattering (SAS) from biomolecules in solution in regard to: (1) sample preparation and instrumentation, (2) data reduction and analysis, and (3) three-dimensional structural modelling and validation. In this context, areas of ongoing research in regard to the interpretation of SAS data will be discussed with a particular focus on structural modelling using computational methods and data from different experimental techniques, including SAS (hybrid methods). Finally, progress made in establishing community accepted publication guidelines and a standard reporting framework that includes SAS data deposition in a public data bank will be described. Importantly, SAS data with associated meta-data can now be held in a format that supports exchange between data archives and seamless interoperability with the world-wide Protein Data Bank (wwPDB). Biomolecular SAS is thus well positioned to contribute to an envisioned federation of data archives in support of hybrid structural biology.

摘要

本章简要回顾了当前溶液中生物分子小角散射(SAS)的最新技术进展,内容涉及:(1)样品制备和仪器设备,(2)数据简化和分析,以及(3)三维结构建模和验证。在这方面,将讨论 SAS 数据分析解释方面正在进行的研究领域,特别关注使用计算方法和来自不同实验技术(包括 SAS(混合方法))的数据进行结构建模。最后,将描述在建立社区认可的出版指南和标准报告框架方面取得的进展,该框架包括在公共数据库中提交 SAS 数据。重要的是,现在可以以支持数据档案之间交换和与全球蛋白质数据库(wwPDB)无缝互操作的格式保存包含相关元数据的生物分子 SAS 数据。因此,生物分子 SAS 有望为支持混合结构生物学的设想中的联合数据档案做出贡献。

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