School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006, Australia.
European Molecular Biology Laboratory (EMBL), Hamburg Unit, Notkestrasse 85, c/o Deutsches Elektronen-Synchrotron, 22607 Hamburg, Germany.
Acta Crystallogr D Struct Biol. 2023 Feb 1;79(Pt 2):122-132. doi: 10.1107/S2059798322012141. Epub 2023 Feb 7.
In 2017, guidelines were published for reporting structural modelling of small-angle scattering (SAS) data from biomolecules in solution that exemplified best-practice documentation of experiments and analysis. Since then, there has been significant progress in SAS data and model archiving, and the IUCr journal editors announced that the IUCr biology journals will require the deposition of SAS data used in biomolecular structure solution into a public archive, as well as adherence to the 2017 reporting guidelines. In this context, the reporting template tables accompanying the 2017 publication guidelines have been reviewed with a focus on making them both easier to use and more general. With input from the SAS community via the IUCr Commission on SAS and attendees of the triennial 2022 SAS meeting (SAS2022, Campinas, Brazil), an updated reporting template table has been developed that includes standard descriptions for proteins, glycosylated proteins, DNA and RNA, with some reorganization of the data to improve readability and interpretation. In addition, a specialized template has been developed for reporting SAS contrast-variation (SAS-cv) data and models that incorporates the additional reporting requirements from the 2017 guidelines for these more complicated experiments. To demonstrate their utility, examples of reporting with these new templates are provided for a SAS study of a DNA-protein complex and a SAS-cv experiment on a protein complex. The examples demonstrate how the tabulated information promotes transparent reporting that, in combination with the recommended figures and additional information best presented in the main text, enables the reader of the work to readily draw their own conclusions regarding the quality of the data and the validity of the models presented.
2017 年,发布了用于报告生物分子溶液中小角散射 (SAS) 数据结构建模的指南,为实验和分析的最佳实践文档提供了范例。自那时以来,SAS 数据和模型归档方面取得了重大进展,国际晶体学联合会期刊编辑宣布,国际晶体学联合会生物学期刊将要求将用于生物分子结构解析的 SAS 数据存入公共档案,并遵守 2017 年报告指南。在这种情况下,对 2017 年发布指南的报告模板表格进行了审查,重点是使它们更易于使用且更通用。通过国际晶体学联合会 SAS 委员会以及三年一次的 2022 年 SAS 会议 (SAS2022,巴西坎皮纳斯) 的 SAS 社区成员的投入,开发了一个经过更新的报告模板表格,其中包括蛋白质、糖基化蛋白质、DNA 和 RNA 的标准描述,对数据进行了一些重新组织,以提高可读性和可解释性。此外,还为报告 SAS 对比变化 (SAS-cv) 数据和模型开发了一个专门的模板,其中包含这些更复杂实验的 2017 年指南的额外报告要求。为了展示它们的实用性,提供了使用这些新模板进行 SAS 研究 DNA-蛋白质复合物和 SAS-cv 实验的报告示例。这些示例演示了如何通过表格信息促进透明报告,结合推荐的图表和主要文本中最佳呈现的其他信息,使读者能够轻松得出关于所呈现数据和模型的质量的结论。