Institute of Ecology, Evolution and Diversity, Goethe University Frankfurt, 60438 Frankfurt am Main, Germany.
Senckenberg Biodiversity and Climate Research Centre (S-BiKF), Senckenberg Gesellschaft für Naturforschung, 60325 Frankfurt am Main, Germany.
Molecules. 2019 Jan 8;24(1):203. doi: 10.3390/molecules24010203.
Lichen-forming fungi produce a vast number of unique natural products with a wide variety of biological activities and human uses. Although lichens have remarkable potential in natural product research and industry, the molecular mechanisms underlying the biosynthesis of lichen metabolites are poorly understood. Here we use genome mining and comparative genomics to assess biosynthetic gene clusters and their putative regulators in the genomes of two lichen-forming fungi, which have substantial commercial value in the perfume industry, and . We report a total of 80 biosynthetic gene clusters (polyketide synthases (PKS), non-ribosomal peptide synthetases and terpene synthases) in and 51 in . We present an in-depth comparison of 11 clusters, which show high homology between the two species. A ketosynthase (KS) phylogeny shows that biosynthetic gene clusters from and are widespread across the Fungi. The phylogeny includes 15 genomes of lichenized fungi and all fungal PKSs with known functions from the MIBiG database. Phylogenetically closely related KS domains predict not only similar PKS architecture but also similar cluster architecture. Our study highlights the untapped biosynthetic richness of lichen-forming fungi, provides new insights into lichen biosynthetic pathways and facilitates heterologous expression of lichen biosynthetic gene clusters.
地衣形成真菌产生了大量具有广泛生物活性和人类用途的独特天然产物。尽管地衣在天然产物研究和工业中有显著的潜力,但地衣代谢物生物合成的分子机制还知之甚少。在这里,我们使用基因组挖掘和比较基因组学来评估两种具有重要商业价值的地衣形成真菌(在香水行业中具有重要商业价值)和 的基因组中的生物合成基因簇及其可能的调节剂。我们总共在 中报告了 80 个生物合成基因簇(聚酮合酶(PKS)、非核糖体肽合酶和萜烯合酶)和 51 个 。我们对地衣形成真菌中生物合成基因簇的系统发育分析显示,来自 和 的生物合成基因簇在真菌中广泛分布。该系统发育包括 15 个地衣真菌基因组和 MIBiG 数据库中所有具有已知功能的真菌 PKS。系统发育上密切相关的酮合成酶(KS)结构域不仅预测了相似的 PKS 结构,而且预测了相似的簇结构。我们的研究强调了地衣形成真菌未被开发的生物合成丰富度,为地衣生物合成途径提供了新的见解,并促进了地衣生物合成基因簇的异源表达。