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一个可反向选择的蔗糖敏感标记可实现. 中的高效、灵活的突变。

A Counterselectable Sucrose Sensitivity Marker Permits Efficient and Flexible Mutagenesis in .

机构信息

Columbia University Vagelos College of Physicians and Surgeons, Department of Pediatrics, New York, New York, USA.

Brown University, Pathobiology Graduate Program, Providence, Rhode Island, USA.

出版信息

Appl Environ Microbiol. 2019 Mar 22;85(7). doi: 10.1128/AEM.03009-18. Print 2019 Apr 1.

Abstract

(group B [GBS]) is a cause of severe infections, particularly during the newborn period. While methods exist for generating chromosomal mutations in GBS, they are cumbersome and inefficient and present significant challenges if the goal is to study subtle mutations, such as single-base-pair polymorphisms. To address this problem, we have developed an efficient and flexible GBS mutagenesis protocol based on sucrose counterselection against levansucrase (SacB) expressed from a temperature-selective shuttle vector. GBS containing the SacB expression cassette demonstrates lethal sensitivity to supplemental sucrose whether the plasmid DNA is replicating outside of the chromosome or has been integrated during a crossover event. Transmission electron microscopy shows that SacB-mediated lethal sucrose sensitivity results from the accumulation of inclusion bodies that eventually lead to complete degradation of normal cellular architecture and subsequent lysis. We used this new mutagenesis technique to generate an in-frame, allelic exchange knockout of the GBS sortase gene , demonstrating that >99% of colonies that emerge from our protocol had the expected knockout phenotype and that among a subset tested by sequencing, 100% had the correct genotype. We also generated barcoded nonsense mutations in the gene in two GBS strains, showing that the approach can be used to make small, precise chromosomal mutations. The ability to generate chromosomal mutations is fundamental to microbiology. Historically, however, GBS pathogenesis research has been made challenging by the relative genetic intractability of the organism. Generating a single knockout in GBS using traditional techniques can take many months, with highly variable success rates. Furthermore, traditional methods do not offer a straightforward way to generate single-base-pair polymorphisms or other subtle changes, especially to noncoding regions of the chromosome. We have developed a new sucrose counterselection-based method that permits rapid, efficient, and flexible GBS mutagenesis. Our technique requires no additional equipment beyond what is needed for traditional approaches. We believe that it will catalyze rapid advances in GBS genetics research by significantly easing the path to generating mutants.

摘要

(GBS)是一种严重感染的原因,特别是在新生儿期。虽然存在用于在 GBS 中产生染色体突变的方法,但它们繁琐且效率低下,如果目标是研究微妙的突变,例如单碱基对多态性,则存在重大挑战。为了解决这个问题,我们开发了一种基于蔗糖反选择对抗来自温度选择性穿梭载体表达的蔗糖酶(SacB)的高效灵活的 GBS 诱变协议。含有 SacB 表达盒的 GBS 对补充蔗糖表现出致命的敏感性,无论质粒 DNA 是否在染色体外复制,还是在交叉事件中整合。透射电子显微镜显示,SacB 介导的致命蔗糖敏感性导致包含体的积累,最终导致正常细胞结构的完全降解和随后的裂解。我们使用这种新的诱变技术生成了 GBS 分选酶基因的框内等位基因交换敲除,证明了我们方案中出现的 >99%的菌落具有预期的敲除表型,并且在经过测序测试的亚组中,100%具有正确的基因型。我们还在两个 GBS 菌株中生成了 基因的条形码无义突变,表明该方法可用于产生小而精确的染色体突变。生成染色体突变的能力是微生物学的基础。然而,从历史上看,GBS 发病机制研究一直受到该生物体相对遗传难以处理的挑战。使用传统技术在 GBS 中产生单个敲除可能需要数月的时间,成功率高度可变。此外,传统方法无法提供一种简单的方法来产生单碱基对多态性或其他微妙的变化,尤其是染色体的非编码区域。我们开发了一种新的基于蔗糖反选择的方法,可实现快速、高效和灵活的 GBS 诱变。我们的技术除了传统方法所需的设备外,不需要额外的设备。我们相信,它将通过显著简化产生突变体的途径,促进 GBS 遗传学研究的快速发展。

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