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二维自相关描述符在预测青蒿素及其类似物抗疟活性中的作用:定量构效关系研究。

Role of 2-Dimensional Autocorrelation Descriptors in Predicting Antimalarial Activity of Artemisinin and its Aanalogues: A QSAR Study.

机构信息

Department of Human Genetics and Molecular Medicine, Central University of Punjab, Bathinda, India.

Department of Pharmaceutical Sciences and Natural Products, Central University of Punjab, Bathinda, India.

出版信息

Curr Top Med Chem. 2018;18(31):2720-2730. doi: 10.2174/1568026619666190119143838.

Abstract

BACKGROUND

Malaria, one of the World's biggest billers' is on the schedule for biomedical research and public health policies. The introduction of the artemisinin, a Chinese traditional drug from Artemisia annua is a revolution in the treatment of malaria. Artemisinin-based combination treatment (ACT) is considered to be the best strategy for uncomplicated Falciparum malaria. The presence of 1,2,4-trioxane system in artemisinin is responsible for its antimalarial activity.

METHODS

In this study, twenty-nine analogues of artemisinin were taken into account for QSAR studies along with artemisinin. The most active analogue of artemisinin 21 was energy minimized. All the structures were prepared from the active conformer 21 and energy was minimized to the stable state using MMFF94 force field using ChemBioDraw-12. Genetic Algorithm is used to decide the descriptors best required for the model generation. The test set and training set division were done by using hierarchal clustering module available with NCSS statistical software.

RESULTS AND CONCLUSION

The antimalarial activity of the artemisinin and its substituted analogues has been analyzed through the multiple linear regression (MLR) using various physiochemical and structural descriptors obtained from PADEL software. The models were prepared using the Sigma Plot version 11. The calculated 2D autocorrelation descriptors and the MLR model suggest that artemisinin and its analogues hold the scope in the optimization of antimalarial activity.

摘要

背景

疟疾是世界上最大的疾病负担之一,已成为生物医学研究和公共卫生政策的重点。青蒿素的出现是治疗疟疾的一场革命,青蒿素类复方疗法(ACT)被认为是治疗无并发症恶性疟原虫疟疾的最佳策略。青蒿素中 1,2,4-三氧杂环己烷系统的存在是其抗疟活性的原因。

方法

在这项研究中,考虑了 29 种青蒿素类似物和青蒿素进行 QSAR 研究。青蒿素最活跃的类似物 21 进行了能量最小化。所有结构均由活性构象 21 制备,并使用 ChemBioDraw-12 中的 MMFF94 力场将能量最小化至稳定状态。遗传算法用于确定模型生成所需的最佳描述符。使用 NCSS 统计软件中提供的层次聚类模块进行测试集和训练集的划分。

结果与结论

使用从 PADEL 软件获得的各种物理化学和结构描述符,通过多元线性回归(MLR)分析了青蒿素及其取代类似物的抗疟活性。使用 Sigma Plot 版本 11 制备模型。计算得到的二维自相关描述符和 MLR 模型表明,青蒿素及其类似物具有优化抗疟活性的潜力。

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