InterMineR：一个用于InterMine数据库的R软件包。
InterMineR: an R package for InterMine databases.
作者信息
Kyritsis Konstantinos A, Wang Bing, Sullivan Julie, Lyne Rachel, Micklem Gos
机构信息
Laboratory of Pharmacology, School of Pharmacy, Aristotle University of Thessaloniki, Thessaloniki GR-54124, Greece.
Department of Genetics, University of Cambridge, Cambridge, UK.
出版信息
Bioinformatics. 2019 Sep 1;35(17):3206-3207. doi: 10.1093/bioinformatics/btz039.
SUMMARY
InterMineR is a package designed to provide a flexible interface between the R programming environment and biological databases built using the InterMine platform. The package offers access to the flexible query builder and the library of term enrichment tools of the InterMine framework, as well as interoperability with other Bioconductor packages. This facilitates automation of data retrieval tasks as well as downstream analysis with existing statistical tools in the R environment.
AVAILABILITY AND IMPLEMENTATION
InterMineR is free and open source, released under the LGPL licence and available from the Bioconductor project and Github (https://bioconductor.org/packages/release/bioc/html/InterMineR.html, https://github.com/intermine/interMineR).
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
摘要
InterMineR是一个旨在在R编程环境与使用InterMine平台构建的生物数据库之间提供灵活接口的软件包。该软件包提供对InterMine框架的灵活查询构建器和术语富集工具库的访问，以及与其他Bioconductor软件包的互操作性。这有助于实现数据检索任务的自动化以及在R环境中使用现有统计工具进行下游分析。
可用性和实现
InterMineR是免费的开源软件，根据LGPL许可发布，可从Bioconductor项目和Github获取（https://bioconductor.org/packages/release/bioc/html/InterMineR.html，https://github.com/intermine/interMineR）。
补充信息
补充数据可在《生物信息学》在线获取。
Zotero 插件