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WRKY 蛋白,多才多艺的调控者,通过转录组学方法调节山杨的干旱胁迫反应。

WRKYs, the Jack-of-various-Trades, Modulate Dehydration Stress in Populus davidiana-A Transcriptomic Approach.

机构信息

Laboratory of Plant Functional Genomics, School of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea.

Department of Agriculture, Abdul Wali Khan University, Mardan 23200, Pakistan.

出版信息

Int J Mol Sci. 2019 Jan 18;20(2):414. doi: 10.3390/ijms20020414.

Abstract

, native to Korea and central Asian countries, is a major contributor to the Korean forest cover. In the current study, using high-throughput RNA-seq mediated transcriptome analysis, we identified about 87 WRKY transcription factors (PopdaWRKY TFs) that showed differential expression to dehydration stress in both sensitive and tolerant cultivars. Our results suggested that, on average, most of the WRKY genes were upregulated in tolerant cultivars but downregulated in sensitive cultivars. Based on protein sequence alignment, WRKYs were classified into three major groups, I, II, III, and further subgroups. Phylogenetic analysis showed that WRKY TFs and their orthologs in Arabidopsis and rice were clustered together in the same subgroups, suggesting similar functions across species. Significant correlation was found among qRT-PCR and RNA-seq analysis. In vivo analysis using model plant Arabidopsis showed that (orthologous to Potri.016G137900) knockout mutants were significantly sensitive to dehydration possibly due to an inability to close their stomata under dehydration conditions. In addition, a concomitant decrease in expression of ABA biosynthetic genes was observed. The that regulates stomatal movement was also downregulated in compared to the wild type. Taken together, our findings suggest a regulatory role of PopdaWRKYs under dehydration stress.

摘要

, 原产于朝鲜和中亚国家,是朝鲜森林覆盖的主要贡献者。在本研究中,我们使用高通量 RNA-seq 介导的转录组分析,鉴定了约 87 个 WRKY 转录因子(PopdaWRKY TFs),它们在敏感和耐受品种中对脱水胁迫表现出差异表达。我们的结果表明,平均而言,大多数 WRKY 基因在耐受品种中上调,但在敏感品种中下调。基于蛋白质序列比对,WRKY 被分为三大类,I、II、III,进一步分为亚组。系统发育分析表明,WRKY TFs 及其在拟南芥和水稻中的同源物在同一亚组中聚类,表明在不同物种中具有相似的功能。qRT-PCR 和 RNA-seq 分析之间存在显著相关性。在模式植物拟南芥中的体内分析表明,(与 Potri.016G137900 同源)敲除突变体对脱水非常敏感,可能是由于在脱水条件下无法关闭气孔。此外,还观察到 ABA 生物合成基因的表达同时下降。调节气孔运动的基因在 中也比野生型下调。总之,我们的研究结果表明,PopdaWRKYs 在脱水胁迫下发挥调节作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37b7/6358917/f0ca1c420c0e/ijms-20-00414-g001.jpg

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