文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

缺氧期间农业土壤中活跃转录的反硝化细菌种群的快速更替

Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell.

作者信息

Liu Binbin, Zhang Xiaojun, Bakken Lars R, Snipen Lars, Frostegård Åsa

机构信息

Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway.

State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.

出版信息

Front Microbiol. 2019 Jan 8;9:3208. doi: 10.3389/fmicb.2018.03208. eCollection 2018.


DOI:10.3389/fmicb.2018.03208
PMID:30671037
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6331397/
Abstract

Denitrification allows sustained respiratory metabolism during periods of anoxia, an advantage in soils with frequent anoxic spells. However, the gains may be more than evened out by the energy cost of producing the denitrification machinery, particularly if the anoxic spell is short. This dilemma could explain the evolution of different regulatory phenotypes observed in model strains, such as sequential expression of the four denitrification genes needed for a complete reduction of nitrate to N, or a "bet hedging" strategy where all four genes are expressed only in a fraction of the cells. In complex environments such strategies would translate into progressive onset of transcription by the members of the denitrifying community. We exposed soil microcosms to anoxia, sampled for amplicon sequencing of , and genes and transcripts after 1, 2 and 4 h, and monitored the kinetics of NO, NO, and N. The cDNA libraries revealed a succession of transcribed genes from active denitrifier populations, which probably reflects various regulatory phenotypes in combination with cross-talks via intermediates ( , NO) produced by the "early onset" denitrifying populations. This suggests that the regulatory strategies observed in individual isolates are also displayed in complex communities, and pinpoint the importance for successive sampling when identifying active key player organisms.

摘要

反硝化作用使得在缺氧时期能够维持呼吸代谢,这对于频繁出现缺氧时段的土壤来说是一个优势。然而,生产反硝化机制的能量成本可能会抵消甚至超过这种优势,特别是当缺氧时段较短时。这种困境可以解释在模式菌株中观察到的不同调控表型的进化,例如将硝酸盐完全还原为氮气所需的四个反硝化基因的顺序表达,或者一种“风险对冲”策略,即所有四个基因仅在一部分细胞中表达。在复杂环境中,这种策略会转化为反硝化群落成员转录的逐步开始。我们将土壤微观生态系统暴露于缺氧环境中,在1小时、2小时和4小时后对 、 和 基因及转录本进行扩增子测序采样,并监测一氧化氮、一氧化二氮和氮气的动力学。cDNA文库揭示了活跃反硝化菌群体中转录基因的相继出现,这可能反映了各种调控表型以及与“早期开始”反硝化群体产生的中间体( 、一氧化氮)的相互作用。这表明在单个分离物中观察到的调控策略也在复杂群落中表现出来,并指出了在识别活跃关键生物体时连续采样的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/67ff6f265503/fmicb-09-03208-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/1c721d6045e1/fmicb-09-03208-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/564dd06dde95/fmicb-09-03208-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/1b4363155e03/fmicb-09-03208-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/0f2f54c3ae44/fmicb-09-03208-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/67ff6f265503/fmicb-09-03208-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/1c721d6045e1/fmicb-09-03208-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/564dd06dde95/fmicb-09-03208-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/1b4363155e03/fmicb-09-03208-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/0f2f54c3ae44/fmicb-09-03208-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1869/6331397/67ff6f265503/fmicb-09-03208-g005.jpg

相似文献

[1]
Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell.

Front Microbiol. 2019-1-8

[2]
Preparation for Denitrification and Phenotypic Diversification at the Cusp of Anoxia: a Purpose for NO Reductase Multiple Roles of O.

Appl Environ Microbiol. 2022-11-8

[3]
Variations of the nirS-, nirK-, and nosZ-denitrifying bacterial communities in a northern Chinese soil as affected by different long-term irrigation regimes.

Environ Sci Pollut Res Int. 2018-3-8

[4]
Denitrification activity of a remarkably diverse fen denitrifier community in finnish lapland is N-oxide limited.

PLoS One. 2015-4-10

[5]
Carbon amendment and soil depth affect the distribution and abundance of denitrifiers in agricultural soils.

Environ Sci Pollut Res Int. 2016-4

[6]
Differential responses of nirK- and nirS-carrying bacteria to denitrifying conditions in the anoxic rice field soil.

Environ Microbiol Rep. 2011-11-27

[7]
Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland.

Appl Environ Microbiol. 2006-9

[8]
pH-driven shifts in overall and transcriptionally active denitrifiers control gaseous product stoichiometry in growth experiments with extracted bacteria from soil.

Front Microbiol. 2015-9-24

[9]
Drying-Rewetting and Flooding Impact Denitrifier Activity Rather than Community Structure in a Moderately Acidic Fen.

Front Microbiol. 2016-6-1

[10]
Responses of denitrifying bacterial communities to short-term waterlogging of soils.

Sci Rep. 2017-4-11

引用本文的文献

[1]
Soil properties drive nitrous oxide accumulation patterns by shaping denitrifying bacteriomes.

Environ Microbiome. 2024-11-21

[2]
Linking meta-omics to the kinetics of denitrification intermediates reveals pH-dependent causes of NO emissions and nitrite accumulation in soil.

ISME J. 2022-1

[3]
Reduced metagenome sequencing for strain-resolution taxonomic profiles.

Microbiome. 2021-3-29

本文引用的文献

[1]
A bet-hedging strategy for denitrifying bacteria curtails their release of NO.

Proc Natl Acad Sci U S A. 2018-11-1

[2]
Transcriptional and environmental control of bacterial denitrification and N2O emissions.

FEMS Microbiol Lett. 2018-3-1

[3]
Genomics and Ecology of Novel NO-Reducing Microorganisms.

Trends Microbiol. 2017-8-10

[4]
Uncultivated microbes in need of their own taxonomy.

ISME J. 2017-11

[5]
Phenotypic and genotypic richness of denitrifiers revealed by a novel isolation strategy.

ISME J. 2017-10

[6]
Soil biochar amendment affects the diversity of nosZ transcripts: Implications for NO formation.

Sci Rep. 2017-6-13

[7]
Design and evaluation of primers targeting genes encoding NO-forming nitrite reductases: implications for ecological inference of denitrifying communities.

Sci Rep. 2016-12-14

[8]
Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity.

Environ Microbiol. 2017-3

[9]
Spatially explicit estimates of N2 O emissions from croplands suggest climate mitigation opportunities from improved fertilizer management.

Glob Chang Biol. 2016-7-4

[10]
Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers.

BMC Genomics. 2016-2-29

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索