Wu Chongyang, Lin Chaoqin, Zhu Xinyi, Liu Hongmao, Zhou Wangxiao, Lu Junwan, Zhu Licheng, Bao Qiyu, Cheng Cong, Hu Yunliang
The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, Zhejiang 325000, China.
School of Laboratory Medicine and Life Sciences/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou 325035, China.
Int J Genomics. 2018 Dec 20;2018:4989602. doi: 10.1155/2018/4989602. eCollection 2018.
In this work, by high-throughput sequencing, antibiotic resistance genes, including class A ( , , , , , and ), class C ( , , , , and ), and class D ( ) -lactamase genes, were identified among the pooled genomic DNA from 212 clinical isolates. Six -positive strains were identified, and pulsed-field gel electrophoresis (PFGE) showed that these strains were not clonally related. The complete genome of the positive strain (Y546) consisted of both a chromosome (4.78 Mb) and a large plasmid pY546 (208.74 kb). The extended-spectrum -lactamases (ESBLs) ( and ) and AmpC ( ) were encoded on the chromosome, and the pY546 plasmid contained several clusters of genes conferring resistance to metals, such as copper (), arsenic (), tellurite (), and tetrathionate (), and genes encoding many divalent cation transporter proteins. The comparative genomic analyses of the whole plasmid sequence and of the heavy metal resistance gene-encoding regions revealed that the plasmid sequences of (such as pKPN-332, pKPN-3967, and pKPN-262) shared the highest similarity with those of pY546. It may be concluded that a variety of -lactamase genes present in which confer resistance to -lactam antibiotics and the emergence of plasmids carrying heavy metal resistance genes in clinical isolates are alarming and need further surveillance.
在本研究中,通过高通量测序,在来自212株临床分离株的混合基因组DNA中鉴定出了抗生素抗性基因,包括A类( 、 、 、 、 和 )、C类( 、 、 、 和 )以及D类( )β-内酰胺酶基因。鉴定出6株 阳性菌株,脉冲场凝胶电泳(PFGE)显示这些菌株无克隆相关性。 阳性菌株(Y546)的完整基因组由一条染色体(4.78 Mb)和一个大质粒pY546(208.74 kb)组成。染色体上编码了超广谱β-内酰胺酶(ESBLs)( 和 )以及AmpC( ),pY546质粒包含几个赋予对金属抗性的基因簇,如对铜( )、砷( )、亚碲酸盐( )和连四硫酸盐( )的抗性基因,以及编码许多二价阳离子转运蛋白的基因。对整个质粒序列和重金属抗性基因编码区域的比较基因组分析表明, (如pKPN - 332、pKPN - 3967和pKPN - 262)的质粒序列与pY546的质粒序列具有最高的相似性。可以得出结论, 中存在的多种赋予对β-内酰胺抗生素抗性的β-内酰胺酶基因以及临床分离株中携带重金属抗性基因的质粒的出现令人担忧,需要进一步监测。