Department for Theoretical Physics, I. Franko National University of Lviv, Lviv, Ukraine.
Department of Chemistry, Aarhus University, 8000, Aarhus C, Denmark.
Sci Rep. 2019 Jan 24;9(1):455. doi: 10.1038/s41598-018-37034-3.
The last decade has seen an exponential expansion of interest in conjugating multiple enzymes of cascades in close proximity to each other, with the overarching goal being to accelerate the overall reaction rate. However, some evidence has emerged that there is no effect of proximity channeling on the reaction velocity of the popular GOx-HRP cascade, particularly in the presence of a competing enzyme (catalase). Herein, we rationalize these experimental results quantitatively. We show that, in general, proximity channeling can enhance reaction velocity in the presence of competing enzymes, but in steady state a significant enhancement can only be achieved for diffusion-limited reactions or at high concentrations of competing enzymes. We provide simple equations to estimate the effect of channeling quantitatively and demonstrate that proximity can have a more pronounced effect under crowding conditions in vivo, particularly that crowding can enhance the overall rates of channeled cascade reactions.
过去十年中,人们对将级联中的多个酶紧密靠近进行连接产生了浓厚的兴趣,其首要目标是加速整体反应速率。然而,有一些证据表明,在存在竞争酶(过氧化氢酶)的情况下,邻近沟道对流行的 GOx-HRP 级联的反应速度没有影响。在此,我们对这些实验结果进行了定量分析。我们表明,一般来说,邻近沟道可以在存在竞争酶的情况下增强反应速度,但在稳态下,只有在扩散限制反应或竞争酶浓度较高的情况下才能实现显著增强。我们提供了简单的方程来定量估计沟道的影响,并表明在体内拥挤条件下,邻近沟道可以产生更明显的效果,特别是拥挤可以增强沟道级联反应的整体速率。