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代谢物通道化是否会加速酶催化的级联反应?

Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?

作者信息

Poshyvailo Liubov, von Lieres Eric, Kondrat Svyatoslav

机构信息

Forschungszentrum Jülich, IBG-1: Biotechnology, Jülich, Germany.

Forschungszentrum Jülich, IEK-7: Institute of Energy and Climate Research, Jülich, Germany.

出版信息

PLoS One. 2017 Feb 24;12(2):e0172673. doi: 10.1371/journal.pone.0172673. eCollection 2017.

Abstract

Metabolite or substrate channeling is a direct transfer of metabolites from one enzyme to the next enzyme in a cascade. Among many potential advantages of substrate channeling, acceleration of the total reaction rate is considered as one of the most important and self-evident. However, using a simple model, supported by stochastic simulations, we show that it is not always the case; particularly at long times (i.e. in steady state) and high substrate concentrations, a channeled reaction cannot be faster, and can even be slower, than the original non-channeled cascade reaction. In addition we show that increasing the degree of channeling may lead to an increase of the metabolite pool size. We substantiate that the main advantage of channeling likely lies in protecting metabolites from degradation or competing side reactions.

摘要

代谢物或底物通道化是指代谢物在级联反应中从一种酶直接转移到下一种酶。在底物通道化的众多潜在优势中,总反应速率的加快被认为是最重要且不言而喻的优势之一。然而,通过一个简单模型并辅以随机模拟,我们发现情况并非总是如此;特别是在长时间(即稳态)和高底物浓度下,有通道化的反应并不一定比原始的无通道化级联反应更快,甚至可能更慢。此外,我们还表明增加通道化程度可能会导致代谢物池大小增加。我们证实通道化的主要优势可能在于保护代谢物不被降解或避免竞争性副反应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/427a/5325314/5897d7f96691/pone.0172673.g001.jpg

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