Nelson David R, Chaiboonchoe Amphun, Fu Weiqi, Hazzouri Khaled M, Huang Ziyuan, Jaiswal Ashish, Daakour Sarah, Mystikou Alexandra, Arnoux Marc, Sultana Mehar, Salehi-Ashtiani Kourosh
Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE.
Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE.
iScience. 2019 Jan 25;11:450-465. doi: 10.1016/j.isci.2018.12.035. Epub 2019 Jan 4.
The activities of microalgae support nutrient cycling that helps to sustain aquatic and terrestrial ecosystems. Most microalgal species, especially those from the subtropics, are genomically uncharacterized. Here we report the isolation and genomic characterization of 22 microalgal species from subtropical coastal regions belonging to multiple clades and three from temperate areas. Halotolerant strains including Halamphora, Dunaliella, Nannochloris, and Chloroidium comprised the majority of these isolates. The subtropical-based microalgae contained arrays of methyltransferase, pyridine nucleotide-disulfide oxidoreductase, abhydrolase, cystathionine synthase, and small-molecule transporter domains present at high relative abundance. We found that genes for sulfate transport, sulfotransferase, and glutathione S-transferase activities were especially abundant in subtropical, coastal microalgal species and halophytic species in general. Our metabolomics analyses indicate lineage- and habitat-specific sets of biomolecules implicated in niche-specific biological processes. This work effectively expands the collection of available microalgal genomes by ∼50%, and the generated resources provide perspectives for studying halophyte adaptive traits.
微藻的活动支持养分循环,有助于维持水生和陆地生态系统。大多数微藻物种,尤其是来自亚热带的物种,其基因组特征尚未得到描述。在此,我们报告了从亚热带沿海地区分离出的22种微藻物种的基因组特征,这些物种属于多个进化枝,还有3种来自温带地区。耐盐菌株包括哈勒姆藻属、杜氏藻属、微绿球藻属和绿球藻属,占这些分离菌株的大多数。基于亚热带的微藻含有大量相对丰度较高的甲基转移酶、吡啶核苷酸二硫化物氧化还原酶、水解酶、胱硫醚合酶和小分子转运结构域。我们发现,硫酸盐转运、磺基转移酶和谷胱甘肽S-转移酶活性的基因在亚热带沿海微藻物种以及一般的盐生植物物种中尤其丰富。我们的代谢组学分析表明,在特定生态位的生物学过程中涉及到特定谱系和栖息地的生物分子集合。这项工作有效地将可用微藻基因组的收集量扩大了约50%,所产生的资源为研究盐生植物的适应性状提供了视角。