产油酵母解脂耶氏酵母H222的基因组序列
Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica H222.
作者信息
Devillers Hugo, Neuvéglise Cécile
机构信息
Micalis Institute, INRA, AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France.
出版信息
Microbiol Resour Announc. 2019 Jan 24;8(4). doi: 10.1128/MRA.01547-18. eCollection 2019 Jan.
Abstract
Here, we report the genome sequence of the oleaginous yeast Yarrowia lipolytica H222. genome assembly shows three main chromosomal rearrangements compared to that of strain E150/CLIB122. This genomic resource will help integrate intraspecies diversity into synthetic biology projects that utilize Yarrowia as a biotechnological chassis for value-added chemical productions.
摘要
在此，我们报道了产油酵母解脂耶氏酵母H222的基因组序列。与E150/CLIB122菌株相比，基因组组装显示出三个主要的染色体重排。这种基因组资源将有助于将种内多样性整合到利用解脂耶氏酵母作为生物技术底盘进行增值化学品生产的合成生物学项目中。
相似文献
1
Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica H222.产油酵母解脂耶氏酵母H222的基因组序列
Microbiol Resour Announc. 2019 Jan 24;8(4). doi: 10.1128/MRA.01547-18. eCollection 2019 Jan.
2
Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity.解脂耶氏酵母菌株W29/CLIB89的序列组装显示了转座元件的多样性。
PLoS One. 2016 Sep 7;11(9):e0162363. doi: 10.1371/journal.pone.0162363. eCollection 2016.
3
Draft genome sequence of NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.能够在木质纤维素水解产物上生长的产油酵母NRRL Y-64008的基因组序列草图
Microbiol Resour Announc. 2023 Dec 14;12(12):e0043523. doi: 10.1128/MRA.00435-23. Epub 2023 Nov 20.
4
Understanding and Eliminating the Detrimental Effect of Thiamine Deficiency on the Oleaginous Yeast Yarrowia lipolytica.了解并消除硫胺素缺乏对产油酵母解脂耶氏酵母的有害影响。
Appl Environ Microbiol. 2020 Jan 21;86(3). doi: 10.1128/AEM.02299-19.
5
Draft Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica PO1f, a Commonly Used Metabolic Engineering Host.产油酵母解脂耶氏酵母PO1f的基因组序列草图，一种常用的代谢工程宿主
Genome Announc. 2014 Jul 3;2(4):e00652-14. doi: 10.1128/genomeA.00652-14.
6
Advances in synthetic biology of oleaginous yeast Yarrowia lipolytica for producing non-native chemicals.油脂酵母解脂耶罗维亚酵母的合成生物学进展及其在生产非天然化学品中的应用。
Appl Microbiol Biotechnol. 2018 Jul;102(14):5925-5938. doi: 10.1007/s00253-018-9099-x. Epub 2018 May 28.
7
Bioengineering of oleaginous yeast Yarrowia lipolytica for lycopene production.用于生产番茄红素的解脂耶氏酵母的生物工程改造。
Methods Mol Biol. 2012;898:153-9. doi: 10.1007/978-1-61779-918-1_9.
8
Engineering Yarrowia lipolytica for Use in Biotechnological Applications: A Review of Major Achievements and Recent Innovations.工程改造解脂耶氏酵母用于生物技术应用：主要成就与最新创新综述
Mol Biotechnol. 2018 Aug;60(8):621-635. doi: 10.1007/s12033-018-0093-4.
9
Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica.基于基因组规模模型驱动的解脂耶氏酵母生产二羧酸的菌株设计
BMC Syst Biol. 2018 Mar 19;12(Suppl 2):12. doi: 10.1186/s12918-018-0542-5.
10
The influence of oxygen limitation for the production of succinic acid with recombinant strains of Yarrowia lipolytica.在氧限制条件下，重组解脂耶氏酵母生产琥珀酸的影响。
Appl Microbiol Biotechnol. 2015 Feb;99(4):1675-86. doi: 10.1007/s00253-014-6252-z. Epub 2014 Dec 2.
引用本文的文献
1
Insights into the Genomic and Phenotypic Landscape of the Oleaginous Yeast .对产油酵母基因组和表型格局的洞察
J Fungi (Basel). 2023 Jan 4;9(1):76. doi: 10.3390/jof9010076.
2
Establishment of a near-contiguous genome sequence of the citric acid producing yeast DSM 3286 with resolution of rDNA clusters and telomeres.构建柠檬酸生产酵母DSM 3286的近连续基因组序列，解析核糖体DNA（rDNA）簇和端粒。
NAR Genom Bioinform. 2021 Oct 14;3(4):lqab085. doi: 10.1093/nargab/lqab085. eCollection 2021 Dec.
3
Strains and Their Biotechnological Applications: How Natural Biodiversity and Metabolic Engineering Could Contribute to Cell Factories Improvement.菌株及其生物技术应用：自然生物多样性和代谢工程如何助力细胞工厂的改进
J Fungi (Basel). 2021 Jul 10;7(7):548. doi: 10.3390/jof7070548.
4
Synthetic biology, systems biology, and metabolic engineering of Yarrowia lipolytica toward a sustainable biorefinery platform.解脂耶氏酵母的合成生物学、系统生物学和代谢工程研究——迈向可持续生物炼制平台。
J Ind Microbiol Biotechnol. 2020 Oct;47(9-10):845-862. doi: 10.1007/s10295-020-02290-8. Epub 2020 Jul 4.
5
Identification of telomerase RNAs in species of the Yarrowia clade provides insights into the co-evolution of telomerase, telomeric repeats and telomere-binding proteins.鉴定出属于 Yarrowia 进化枝的物种中的端粒酶 RNA，有助于深入了解端粒酶、端粒重复序列和端粒结合蛋白的共同进化。
Sci Rep. 2019 Sep 16;9(1):13365. doi: 10.1038/s41598-019-49628-6.
6
Pangloss: A Tool for Pan-Genome Analysis of Microbial Eukaryotes.庞加莱：一种用于微生物真核生物泛基因组分析的工具。
Genes (Basel). 2019 Jul 10;10(7):521. doi: 10.3390/genes10070521.
本文引用的文献
1
Synthetic Biology Expands the Industrial Potential of Yarrowia lipolytica.合成生物学拓展了解脂耶氏酵母的工业潜力。
Trends Biotechnol. 2018 Oct;36(10):1085-1095. doi: 10.1016/j.tibtech.2018.05.004. Epub 2018 Jun 4.
2
Draft Genome Sequence of Yarrowia lipolytica Strain A-101 Isolated from Polluted Soil in Poland.从波兰污染土壤中分离出的解脂耶氏酵母菌株A-101的基因组序列草图
Genome Announc. 2016 Oct 6;4(5):e01094-16. doi: 10.1128/genomeA.01094-16.
3
Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity.解脂耶氏酵母菌株W29/CLIB89的序列组装显示了转座元件的多样性。
PLoS One. 2016 Sep 7;11(9):e0162363. doi: 10.1371/journal.pone.0162363. eCollection 2016.
4
The influence of oxygen limitation for the production of succinic acid with recombinant strains of Yarrowia lipolytica.在氧限制条件下，重组解脂耶氏酵母生产琥珀酸的影响。
Appl Microbiol Biotechnol. 2015 Feb;99(4):1675-86. doi: 10.1007/s00253-014-6252-z. Epub 2014 Dec 2.
5
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
6
Engineering the α-ketoglutarate overproduction from raw glycerol by overexpression of the genes encoding NADP+-dependent isocitrate dehydrogenase and pyruvate carboxylase in Yarrowia lipolytica.通过在解脂耶氏酵母中过表达编码 NADP+-依赖性异柠檬酸脱氢酶和丙酮酸羧化酶的基因，从原始甘油生产α-酮戊二酸。
Appl Microbiol Biotechnol. 2014 Mar;98(5):2003-13. doi: 10.1007/s00253-013-5369-9. Epub 2013 Nov 26.
7
Informed and automated k-mer size selection for genome assembly.基于信息和自动化的基因组组装的 k-mer 大小选择。
Bioinformatics. 2014 Jan 1;30(1):31-7. doi: 10.1093/bioinformatics/btt310. Epub 2013 Jun 3.
8
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.TopHat2：在存在插入、缺失和基因融合的情况下对转录组进行精确比对。
Genome Biol. 2013 Apr 25;14(4):R36. doi: 10.1186/gb-2013-14-4-r36.
9
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2：一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
10
RATT: Rapid Annotation Transfer Tool.RATT：快速注释转移工具。
Nucleic Acids Res. 2011 May;39(9):e57. doi: 10.1093/nar/gkq1268. Epub 2011 Feb 8.
Zotero 插件