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邻苯二甲酸在假单胞菌 PTH10 中的利用涉及 2,3-二羟基苯甲酸间位裂解途径。

2,3-Dihydroxybenzoate meta-Cleavage Pathway is Involved in o-Phthalate Utilization in Pseudomonas sp. strain PTH10.

机构信息

Department of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata, 940-2188, Japan.

Genaris, Inc., Yokohama, Kanagawa, 230-0046, Japan.

出版信息

Sci Rep. 2019 Feb 4;9(1):1253. doi: 10.1038/s41598-018-38077-2.

Abstract

Pseudomonas sp. strain PTH10 can utilize o-phthalate which is a key intermediate in the bacterial degradation of some polycyclic aromatic hydrocarbons. In this strain, o-phthalate is degraded to 2,3-dihydroxybenzoate and further metabolized via the 2,3-dihydroxybenzoate meta-cleavage pathway. Here, the opa genes which are involved in the o-phthalate catabolism were identified. Based on the enzymatic activity of the opa gene products, opaAaAbAcAd, opaB, opaC, and opaD were found to code for o-phthalate 2,3-dioxygenase, dihydrodiol dehydrogenase, 2,3-dihydroxybenzoate 3,4-dioxygenase, and 3-carboxy-2-hydroxymuconate-6-semialdehyde decarboxylase, respectively. Collectively, these enzymes are thought to catalyze the conversion of o-phthalate to 2-hydroxymuconate-6-semialdehyde. Deletion mutants of the above opa genes indicated that their products were required for the utilization of o-phthalate. Transcriptional analysis showed that the opa genes were organized in the same transcriptional unit. Quantitative analysis of opaAa, opaB, opaC, opaD, opaE, and opaN revealed that, except for opaB and opaC, all other genes were transcriptionally induced during growth on o-phthalate. The constitutive expression of opaB and opaC, and the transcriptional induction of opaD located downstream of opaB, suggest several possible internal promoters are existence in the opa cluster. Together, these results strongly suggest that the opa genes are involved in a novel o-phthalate catabolic pathway in strain PTH10.

摘要

假单胞菌 PTH10 菌株可以利用邻苯二甲酸,邻苯二甲酸是某些多环芳烃细菌降解的关键中间产物。在该菌株中,邻苯二甲酸降解为 2,3-二羟基苯甲酸,并通过 2,3-二羟基苯甲酸元切割途径进一步代谢。在这里,确定了参与邻苯二甲酸分解代谢的 opa 基因。根据 opa 基因产物的酶活性,发现 opaAaAbAcAd、opaB、opaC 和 opaD 分别编码邻苯二甲酸 2,3-双加氧酶、二氢二醇脱氢酶、2,3-二羟基苯甲酸 3,4-双加氧酶和 3-羧基-2-羟甲基戊烯酸-6-半醛脱羧酶。这些酶共同被认为可以催化邻苯二甲酸转化为 2-羟甲基戊烯酸-6-半醛。上述 opa 基因的缺失突变体表明其产物是利用邻苯二甲酸所必需的。转录分析表明,opa 基因在同一转录单元中被组织。对 opaAa、opaB、opaC、opaD、opaE 和 opaN 的定量分析表明,除了 opaB 和 opaC 之外,所有其他基因在以邻苯二甲酸为生长基质时都被转录诱导。opaB 和 opaC 的组成型表达以及位于 opaB 下游的 opaD 的转录诱导表明,opa 簇中存在几个可能的内部启动子。总之,这些结果强烈表明,opa 基因参与了 PTH10 菌株中一种新的邻苯二甲酸分解代谢途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3966/6362003/75f8082f801b/41598_2018_38077_Fig1_HTML.jpg

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