Dipartimento di Biologia Ambientale, Sapienza Università di Roma, Rome, Italy.
Department of Anthropology, University of Texas at Austin, Austin, Texas.
Anat Rec (Hoboken). 2019 Jul;302(7):1104-1115. doi: 10.1002/ar.24077. Epub 2019 Feb 22.
The study of the fossil record is fundamental to understand the evolution of traits. Because fossil remains are often fragmented and/or deformed by taphonomic processes, a preliminary realignment of their constituent parts is often necessary to properly interpret their shapes. In virtual anthropology, these procedures are carried out using digital models of the remains. We present a new semi-automatic alignment R software, Digital Tool for Alignment (DTA), which uses the shape information contained in a reference sample to find the best alignment solution for the disarticulated regions. We tested DTA on three different case-studies: (1) a sample of 14 primate species including both male and female individuals, (2) a simulated, disarticulated skull of Homo sapiens, and (3) a real disarticulated human fossil specimen, Amud 1 (Homo neanderthalensis). In the first case study, we simulated disarticulation directly on digital models of the primate skulls and tested alignment quality as a function of phylogenetic proximity, sex, and body size. In the second, we compared DTA to manual alignments conducted for the same digital models. Finally, we performed DTA on a real-world case study. We found that phylogenetic proximity provides is the most important factor for alignment efficiency. However, sex and allometric effects might also be important and should therefore be taken into account at selecting reference models for alignments. DTA performs at least as well as manual alignments. Yet, as compared to manual procedures, it is faster, requires no prior anatomical knowledge and expertise and allows indefinite manipulation of the fossil items. Anat Rec, 302:1104-1115, 2019. © 2019 Wiley Periodicals, Inc.
研究化石记录对于理解特征的进化至关重要。由于化石遗骸经常受到化石化过程的碎片化和/或变形,因此通常需要对其组成部分进行初步的重新排列,以正确解释其形状。在虚拟人类学中,这些程序是使用遗骸的数字模型进行的。我们提出了一种新的半自动对齐 R 软件,即数字对齐工具(DTA),它使用参考样本中包含的形状信息来为离散区域找到最佳对齐解决方案。我们在三个不同的案例研究中测试了 DTA:(1)包括男性和女性个体在内的 14 种灵长类物种的样本,(2)模拟的离散人类头骨,以及(3)真实的离散人类化石标本 Amud 1(尼安德特人)。在第一个案例研究中,我们直接在灵长类头骨的数字模型上模拟离散化,并测试了作为系统发育接近度、性别和体型函数的对齐质量。在第二个案例中,我们将 DTA 与为相同数字模型进行的手动对齐进行了比较。最后,我们在真实案例研究中进行了 DTA。我们发现,系统发育接近度是对齐效率最重要的因素。然而,性别和同型性效应对对齐也很重要,因此在选择用于对齐的参考模型时应考虑这些因素。DTA 的性能至少与手动对齐一样好。然而,与手动程序相比,它更快,不需要先验的解剖学知识和专业知识,并且可以无限期地操作化石物品。解剖记录,302:1104-1115,2019。©2019 威利期刊公司