Institute of Biological Chemistry, Washington State University, Pullman, WA, USA.
Department of Microbiology and Immunology, Montana State University, Bozeman, MT, USA.
Free Radic Biol Med. 2019 Aug 20;140:250-259. doi: 10.1016/j.freeradbiomed.2019.01.050. Epub 2019 Feb 5.
Biological nitrogen fixation via the activity of nitrogenase is one of the most important biological innovations, allowing for an increase in global productivity that eventually permitted the emergence of higher forms of life. The complex metalloenzyme termed nitrogenase contains complex iron-sulfur cofactors. Three versions of nitrogenase exist that differ mainly by the presence or absence of a heterometal at the active site metal cluster (either Mo or V). Mo-dependent nitrogenase is the most common while V-dependent or heterometal independent (Fe-only) versions are often termed alternative nitrogenases since they have apparent lower activities for N reduction and are expressed in the absence of Mo. Phylogenetic data indicates that biological nitrogen fixation emerged in an anaerobic, thermophilic ancestor of hydrogenotrophic methanogens and later diversified via lateral gene transfer into anaerobic bacteria, and eventually aerobic bacteria including Cyanobacteria. Isotopic evidence suggests that nitrogenase activity existed at 3.2 Ga, prior to the advent of oxygenic photosynthesis and rise of oxygen in the atmosphere, implying the presence of favorable environmental conditions for oxygen-sensitive nitrogenase to evolve. Following the proliferation of oxygenic phototrophs, diazotrophic organisms had to develop strategies to protect nitrogenase from oxygen inactivation and generate the right balance of low potential reducing equivalents and cellular energy for growth and nitrogen fixation activity. Here we review the fundamental advances in our understanding of biological nitrogen fixation in the context of the emergence, evolution, and taxonomic distribution of nitrogenase, with an emphasis placed on key events associated with its emergence and diversification from anoxic to oxic environments.
生物固氮作用通过氮酶的活性是最重要的生物创新之一,它增加了全球生产力,最终允许更高形式的生命出现。被称为氮酶的复杂金属酶含有复杂的铁硫辅因子。存在三种不同版本的氮酶,主要区别在于活性位点金属簇中是否存在杂金属(Mo 或 V)。Mo 依赖的氮酶是最常见的,而 V 依赖或杂金属独立(仅 Fe)的版本通常被称为替代氮酶,因为它们对 N 还原的活性明显较低,并且在没有 Mo 的情况下表达。系统发育数据表明,生物固氮作用出现在产氢甲烷古菌的厌氧、嗜热祖先中,后来通过横向基因转移多样化到厌氧细菌中,最终进入包括蓝细菌在内的需氧细菌中。同位素证据表明,氮酶活性存在于 32 亿年前,早于产氧光合作用和大气中氧气的出现,这意味着存在有利于氧气敏感氮酶进化的环境条件。随着好氧光合生物的增殖,固氮生物必须发展策略来保护氮酶免受氧气失活,并为生长和氮固定活性产生合适的低势能还原当量和细胞能量平衡。在这里,我们回顾了在氮酶的出现、进化和分类分布背景下对生物固氮作用的基本理解的进展,并重点介绍了与从缺氧环境到需氧环境的出现和多样化相关的关键事件。