Liu Changkun, Yang Zhenyan, Yang Lifang, Yang Junbo, Ji Yunheng
Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China.
School of Life Science, Yunnan University, Kunming 650091, China.
Plant Divers. 2018 Nov 22;40(6):265-276. doi: 10.1016/j.pld.2018.11.001. eCollection 2018 Dec.
(Araliaceae) is an endangered and medicinally important plant endemic to China. However, phylogenetic relationships within the genus have remained unclear. In this study, we sequenced the complete plastome of and included previously reported plastomes to better understand the relationships between species and plastome evolution within the genus . The plastome of is 156,069 base pairs (bp) in length, consisting of a pair of inverted repeats (IRs, each 25,887 bp) that divide the plastome into a large single copy region (LSC, 86,126 bp) and a small single copy region (SSC, 8169 bp). The plastome contains 114 unigenes (80 protein-coding genes, 30 tRNA genes, and 4 rRNA genes). Comparative analyses indicated that the plastome gene content and order, as well as the expansion/contraction of the IR regions, are all highly conserved within . No significant positive selection in the plastid protein-coding genes was observed across the eight species, suggesting the plastomes may have undergone a strong purifying selection. Our phylogenomic analyses resulted in a phylogeny with high resolution and supports for . Nine protein-coding genes and 10 non-coding regions presented high sequence divergence, which could be useful for identifying different species.
(五加科)是中国特有的一种濒危且具有重要药用价值的植物。然而,该属内的系统发育关系仍不清楚。在本研究中,我们对[物种名称]的完整叶绿体基因组进行了测序,并纳入了先前报道的[其他物种名称]叶绿体基因组,以更好地了解该属内物种之间的关系以及叶绿体基因组的进化。[物种名称]的叶绿体基因组长度为156,069碱基对(bp),由一对反向重复序列(IRs,每个25,887 bp)组成,这将叶绿体基因组分为一个大单拷贝区域(LSC,86,126 bp)和一个小单拷贝区域(SSC,8169 bp)。叶绿体基因组包含114个单基因(80个蛋白质编码基因、30个tRNA基因和4个rRNA基因)。比较分析表明,叶绿体基因组的基因含量和顺序以及IR区域的扩张/收缩在[属名称]内都高度保守。在八个[物种名称]物种中,未观察到质体蛋白质编码基因有显著的正选择,这表明[物种名称]叶绿体基因组可能经历了强烈的纯化选择。我们的系统发育基因组分析产生了一个具有高分辨率的系统发育树,并支持[相关结论]。九个蛋白质编码基因和10个非编码区域呈现出高序列差异,这可能有助于识别不同的[物种名称]物种。