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使用全基因组测序对培养测试假阳性进行调查。

Investigation of false-positive culture tests using whole genome sequencing.

作者信息

Min Jinsoo, Kim Kyungjong, Choi Hongjo, Kang Eun Seok, Shin Yoon Mi, An Jin Young, Choe Kang Hyeon, Lee Ki Man

机构信息

Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, Daejeon St. Mary's Hospital, The Catholic University of Korea, Daejeon, Republic of Korea.

Department of Research and Development, Korean Institute of Tuberculosis, Osong, Cheongju, Republic of Korea.

出版信息

Ann Thorac Med. 2019 Jan-Mar;14(1):90-93. doi: 10.4103/atm.ATM_184_18.

DOI:10.4103/atm.ATM_184_18
PMID:30745941
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6341868/
Abstract

Although accurate identification of is the gold standard for tuberculosis (TB) diagnosis, there have been several reports of false-positive results. After identifying a sudden increase in extensively drug-resistant TB, false-positive mycobacterial culture tests were suspected, and we contacted the supranational reference center for molecular typing. genotyping tests showed that isolates from all five patients had an identical genotype pattern, and all harbored the same Beijing strain based on sequence-based phylogenic analysis and drug-resistant single nucleotide polymorphisms (SNPs) analysis. We also used whole genome sequencing (WGS) to compare the SNPs of all isolates with a reference genome, and all were identical. We adapted WGS to efficiently detect false-positive MTB culture tests.

摘要

虽然准确鉴定[具体内容缺失]是结核病(TB)诊断的金标准,但已有数例假阳性结果的报告。在发现广泛耐药结核病突然增加后,怀疑分枝杆菌培养试验出现假阳性,我们联系了超国家分子分型参考中心。[具体内容缺失]基因分型测试表明,所有五名患者的分离株具有相同的基因型模式,基于序列系统发育分析和耐药单核苷酸多态性(SNP)分析,所有分离株均携带相同的北京菌株。我们还使用全基因组测序(WGS)将所有分离株的SNP与参考基因组进行比较,结果均相同。我们采用WGS来有效检测结核分枝杆菌培养试验的假阳性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98a6/6341868/dfff5e934e17/ATM-14-90-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98a6/6341868/9606b3e5721e/ATM-14-90-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98a6/6341868/dfff5e934e17/ATM-14-90-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98a6/6341868/9606b3e5721e/ATM-14-90-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98a6/6341868/dfff5e934e17/ATM-14-90-g003.jpg

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本文引用的文献

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Molecular Strain Typing of Mycobacterium tuberculosis: a Review of Frequently Used Methods.结核分枝杆菌的分子菌株分型:常用方法综述
J Korean Med Sci. 2016 Nov;31(11):1673-1683. doi: 10.3346/jkms.2016.31.11.1673.
2
TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing.TGS-TB:利用短读长全基因组测序技术的结核分枝杆菌全基因分型解决方案
PLoS One. 2015 Nov 13;10(11):e0142951. doi: 10.1371/journal.pone.0142951. eCollection 2015.
3
Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences.
通过全基因组序列快速测定抗结核药物耐药性。
Genome Med. 2015 May 27;7(1):51. doi: 10.1186/s13073-015-0164-0. eCollection 2015.
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Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach.基于全基因组的结核分枝杆菌监测:一种标准化、便携且可扩展的方法。
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PLoS Med. 2013;10(2):e1001387. doi: 10.1371/journal.pmed.1001387. Epub 2013 Feb 12.
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Impact of laboratory cross-contamination on molecular epidemiology studies of tuberculosis.实验室交叉污染对结核病分子流行病学研究的影响。
J Clin Microbiol. 2006 Aug;44(8):2967-9. doi: 10.1128/JCM.00754-06.
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Investigation of Laboratory cross-contamination of Mycobacterium tuberculosis cultures.结核分枝杆菌培养物实验室交叉污染的调查。
Clin Infect Dis. 2004 Mar 15;38(6):e52-4. doi: 10.1086/382076. Epub 2004 Feb 27.
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