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From a dominant to an oligogenic model of inheritance with environmental modifiers in acute intermittent porphyria.在急性间歇性血卟啉症中,遗传模式从显性遗传转变为寡基因遗传,并受到环境修饰物的影响。
Hum Mol Genet. 2018 Apr 1;27(7):1164-1173. doi: 10.1093/hmg/ddy030.
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Integrative gene network analysis identifies key signatures, intrinsic networks and host factors for influenza virus A infections.整合基因网络分析确定甲型流感病毒感染的关键特征、内在网络和宿主因子。
NPJ Syst Biol Appl. 2017 Dec 4;3:35. doi: 10.1038/s41540-017-0036-x. eCollection 2017.
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A Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq.通过 RNA-seq 技术对 17 种组织的小鼠转录组进行全面的转录组体图谱绘制。
Sci Rep. 2017 Jun 23;7(1):4200. doi: 10.1038/s41598-017-04520-z.
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Directed Differentiation of Human Pluripotent Stem Cells to Microglia.人多能干细胞向小神经胶质细胞的定向分化。
Stem Cell Reports. 2017 Jun 6;8(6):1516-1524. doi: 10.1016/j.stemcr.2017.04.023. Epub 2017 May 18.
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Acute Intermittent Porphyria: Predicted Pathogenicity of HMBS Variants Indicates Extremely Low Penetrance of the Autosomal Dominant Disease.急性间歇性卟啉症:HMBS基因变异的预测致病性表明常染色体显性疾病的外显率极低。
Hum Mutat. 2016 Nov;37(11):1215-1222. doi: 10.1002/humu.23067. Epub 2016 Sep 5.
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Glucose metabolism during fasting is altered in experimental porphobilinogen deaminase deficiency.实验性胆色素原脱氨酶缺乏症会改变禁食期间的葡萄糖代谢。
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Substantial DNA methylation differences between two major neuronal subtypes in human brain.人类大脑中两种主要神经元亚型之间存在显著的DNA甲基化差异。
Nucleic Acids Res. 2016 Apr 7;44(6):2593-612. doi: 10.1093/nar/gkv1304. Epub 2015 Nov 26.
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Identifying glioblastoma gene networks based on hypergeometric test analysis.基于超几何检验分析识别胶质母细胞瘤基因网络。
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AIP 小鼠肝转录组在苯巴比妥诱导下的特征分析。

Characterization of the hepatic transcriptome following phenobarbital induction in mice with AIP.

机构信息

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

出版信息

Mol Genet Metab. 2019 Nov;128(3):382-390. doi: 10.1016/j.ymgme.2018.12.010. Epub 2019 Jan 6.

DOI:10.1016/j.ymgme.2018.12.010
PMID:30777612
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6612539/
Abstract

Acute Intermittent Porphyria (AIP), an autosomal dominant hepatic disorder, results from hydroxymethylbilane synthase (HMBS) mutations that decrease the encoded enzymatic activity, thereby predisposing patients to life-threatening acute neurovisceral attacks. The 1% penetrance of AIP suggests that other genetic factors modulate the onset and severity of the acute attacks. Here, we characterized the hepatic transcriptomic response to phenobarbital (PB) administration in AIP mice, which mimics the biochemical attacks of AIP. At baseline, the mRNA profiles of 14,138 hepatic genes prior to treatment were remarkably similar between AIP and the congenic wild-type (WT) mice. After PB treatment (120 mg/kg x 3d), 1347 and 1120 genes in AIP mice and 422 and 404 genes in WT mice were uniquely up- and down-regulated, respectively, at a False Discovery Rate < 0.05. As expected, the ALAS1 expression increased 4.5-fold and 15.9-fold in the WT and AIP mice, respectively. ALA-dehydrogenase also was induced ~1.7-fold in PB-induced AIP mice, but was unchanged in PB-induced WT mice. There was no statistically significant difference in the overall expression of 155 hepatic cytochrome P450 enzymes, although Cyp2c40, Cyp2c68, Cyp2c69, Mgst3 were upregulated only in PB-induced AIP mice (>1.9-fold) and Cyp21a1 was upregulated only in PB-induced WT mice (>9-fold). Notably, the genes differentially expressed in induced AIP mice were enriched in circadian rhythm, mitochondria biogenesis and electron transport, suggesting these pathways were involved in AIP mice responding to PB treatment. These results advance our understanding of the hepatic metabolic changes in PB-induced AIP mice and have implications in the pathogenesis of AIP acute attacks.

摘要

急性间歇性卟啉症(AIP)是一种常染色体显性遗传性肝脏疾病,由羟甲基胆素合酶(HMBS)突变引起,降低了编码酶的活性,从而使患者易发生危及生命的急性神经内脏发作。AIP 的约 1%外显率表明,其他遗传因素可调节急性发作的发作和严重程度。在这里,我们描述了 AIP 小鼠中海马体转录组对苯巴比妥(PB)治疗的反应,该反应模拟了 AIP 的生化攻击。在基线时,治疗前 AIP 和同基因野生型(WT)小鼠之间的 14138 个肝基因的 mRNA 谱非常相似。PB 治疗后(约 120mg/kg x 3d),AIP 小鼠中有 1347 个和 1120 个基因,WT 小鼠中有 422 个和 404 个基因分别上调和下调,假发现率 < 0.05。正如预期的那样,ALAS1 在 WT 和 AIP 小鼠中的表达分别增加了 4.5 倍和 15.9 倍。ALA 脱氢酶在 PB 诱导的 AIP 小鼠中也被诱导约 1.7 倍,但在 PB 诱导的 WT 小鼠中未改变。尽管 Cyp2c40、Cyp2c68、Cyp2c69、Mgst3 仅在 PB 诱导的 AIP 小鼠中上调(>1.9 倍),Cyp21a1 仅在 PB 诱导的 WT 小鼠中上调(>9 倍),但 155 种肝细胞色素 P450 酶的总体表达没有统计学上的显著差异。值得注意的是,在诱导的 AIP 小鼠中差异表达的基因在昼夜节律、线粒体生物发生和电子传递中富集,表明这些途径参与了 AIP 小鼠对 PB 治疗的反应。这些结果提高了我们对 PB 诱导的 AIP 小鼠中海马体代谢变化的理解,并对 AIP 急性发作的发病机制有影响。