Laboratory of Functional Molecules and Materials, School of Physics and Optoelectronic Engineering, Shandong University of Technology, Zibo 255000, China.
Beijing Research Center for Agricultural Standards and Testing, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China.
Molecules. 2019 Feb 20;24(4):769. doi: 10.3390/molecules24040769.
[Ru(bpy)₂dppz] and [Ru(phen)₂dppz] as the light switches of the deoxyribose nucleic acid (DNA) molecule have attracted much attention and have become a powerful tool for exploring the structure of the DNA helix. Their interactions have been intensively studied because of the excellent photophysical and photochemical properties of ruthenium compounds. In this perspective, this review describes the recent developments in the interactions of these two classic intercalated compounds with a DNA helix. The mechanism of the molecular light switch effect and the selectivity of these two compounds to different forms of a DNA helix has been discussed. In addition, the specific binding modes between them have been discussed in detail, for a better understanding the mechanism of the light switch and the luminescence difference. Finally, recent studies of single molecule force spectroscopy have also been included so as to precisely interpret the kinetics, equilibrium constants, and the energy landscape during the process of the dynamic assembly of ligands into a single DNA helix.
[Ru(bpy)₂dppz] 和 [Ru(phen)₂dppz] 作为脱氧核糖核酸 (DNA) 分子的光开关引起了广泛关注,已成为探索 DNA 螺旋结构的有力工具。由于钌化合物具有优异的光物理和光化学性质,因此它们的相互作用得到了深入研究。在这篇观点文章中,描述了这两种经典嵌入化合物与 DNA 螺旋相互作用的最新进展。讨论了分子光开关效应的机制以及这两种化合物对不同形式 DNA 螺旋的选择性。此外,还详细讨论了它们之间的特定结合模式,以便更好地理解光开关和发光的差异的机制。最后,还包括了对单分子力谱学的最新研究,以便更精确地解释在配体动态组装到单个 DNA 螺旋过程中的动力学、平衡常数和能量景观。