Pohang Accelerator Laboratory, Pohang, Gyeongbuk, Republic of Korea.
Department of Life Science, POSTECH, Pohang, Gyeongbuk, Republic of Korea.
Sci Rep. 2019 Feb 21;9(1):2525. doi: 10.1038/s41598-019-39020-9.
Serial femtosecond crystallography (SFX) provides opportunities to observe the dynamics of macromolecules without causing radiation damage at room temperature. Although SFX provides a biologically more reliable crystal structure than provided by the existing synchrotron sources, there are limitations due to the consumption of many crystal samples. A viscous medium as a carrier matrix reduces the flow rate of the crystal sample from the injector, thereby dramatically reducing sample consumption. However, the currently available media cannot be applied to specific crystal samples owing to reactions between the viscous medium and crystal sample. The discovery and characterisation of a new delivery medium for SFX can further expand its use. Herein, we report the preparation of a polyacrylamide (PAM) injection matrix to determine the crystal structure with an X-ray free-electron laser. We obtained 11,936 and 22,213 indexed images using 0.5 mg lysozyme and 1.0 mg thermolysin, respectively. We determined the crystal structures of lysozyme and thermolysin delivered in PAM at 1.7 Å and 1.8 Å resolutions. The maximum background scattering from PAM was lower than monoolein, a commonly used viscous medium. Our results show that PAM can be used as a sample delivery media in SFX studies.
连续飞秒晶体学(SFX)提供了在室温下观察大分子动力学而不造成辐射损伤的机会。虽然 SFX 提供的晶体结构比现有同步加速器源提供的更能反映生物实际情况,但由于需要消耗大量晶体样本,其仍存在一定局限性。粘性介质作为载体基质可降低注射器中晶体样本的流速,从而大大减少样本消耗。然而,由于粘性介质与晶体样本之间的反应,目前可用的介质无法应用于特定的晶体样本。SFX 新输送介质的发现和特性研究可以进一步扩大其应用范围。在此,我们报告了一种聚丙酰胺(PAM)注射基质的制备方法,用于使用 X 射线自由电子激光确定晶体结构。我们使用 0.5mg 溶菌酶和 1.0mg 耐热菌蛋白酶分别获得了 11936 和 22213 张索引图像。我们确定了在 PAM 中输送的溶菌酶和耐热菌蛋白酶的晶体结构,分辨率分别为 1.7Å 和 1.8Å。PAM 的最大背景散射低于常用的粘性介质——单油酸甘油酯。我们的结果表明,PAM 可以用作 SFX 研究中的样品输送介质。