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串行飞秒晶体学:结构生物学的一场革命。

Serial femtosecond crystallography: A revolution in structural biology.

作者信息

Martin-Garcia Jose M, Conrad Chelsie E, Coe Jesse, Roy-Chowdhury Shatabdi, Fromme Petra

机构信息

School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA; Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287-7401, USA.

School of Molecular Sciences, Arizona State University, Tempe, AZ 85287-1604, USA; Center for Applied Structural Discovery, The Biodesign Institute, Arizona State University, Tempe, AZ 85287-7401, USA.

出版信息

Arch Biochem Biophys. 2016 Jul 15;602:32-47. doi: 10.1016/j.abb.2016.03.036. Epub 2016 Apr 30.

Abstract

Macromolecular crystallography at synchrotron sources has proven to be the most influential method within structural biology, producing thousands of structures since its inception. While its utility has been instrumental in progressing our knowledge of structures of molecules, it suffers from limitations such as the need for large, well-diffracting crystals, and radiation damage that can hamper native structural determination. The recent advent of X-ray free electron lasers (XFELs) and their implementation in the emerging field of serial femtosecond crystallography (SFX) has given rise to a remarkable expansion upon existing crystallographic constraints, allowing structural biologists access to previously restricted scientific territory. SFX relies on exceptionally brilliant, micro-focused X-ray pulses, which are femtoseconds in duration, to probe nano/micrometer sized crystals in a serial fashion. This results in data sets comprised of individual snapshots, each capturing Bragg diffraction of single crystals in random orientations prior to their subsequent destruction. Thus structural elucidation while avoiding radiation damage, even at room temperature, can now be achieved. This emerging field has cultivated new methods for nanocrystallogenesis, sample delivery, and data processing. Opportunities and challenges within SFX are reviewed herein.

摘要

同步辐射源的大分子晶体学已被证明是结构生物学中最具影响力的方法,自其诞生以来已产生了数千个结构。虽然其效用在推进我们对分子结构的认识方面发挥了重要作用,但它也存在一些局限性,例如需要大的、衍射良好的晶体,以及可能妨碍天然结构测定的辐射损伤。最近X射线自由电子激光(XFEL)的出现及其在新兴的飞秒连续晶体学(SFX)领域的应用,显著扩展了现有的晶体学限制,使结构生物学家能够进入以前受限的科学领域。SFX依靠持续时间为飞秒级的极其明亮的微聚焦X射线脉冲,以串行方式探测纳米/微米尺寸的晶体。这导致数据集由单个快照组成,每个快照在随后的破坏之前捕获随机取向的单晶的布拉格衍射。因此,即使在室温下,也可以在避免辐射损伤的情况下实现结构解析。这个新兴领域已经发展出了纳米晶体生成、样品输送和数据处理的新方法。本文综述了SFX中的机遇和挑战。

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本文引用的文献

1
Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.
Science. 2016 May 6;352(6286):725-9. doi: 10.1126/science.aad5081. Epub 2016 May 5.
2
Fixed target matrix for femtosecond time-resolved and in situ serial micro-crystallography.
Struct Dyn. 2015 Aug 18;2(5):054302. doi: 10.1063/1.4928706. eCollection 2015 Sep.
3
Serial femtosecond X-ray diffraction of enveloped virus microcrystals.
Struct Dyn. 2015 Aug 20;2(4):041720. doi: 10.1063/1.4929410. eCollection 2015 Jul.
5
Ternary structure reveals mechanism of a membrane diacylglycerol kinase.
Nat Commun. 2015 Dec 17;6:10140. doi: 10.1038/ncomms10140.
8
Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.
Science. 2015 Oct 23;350(6259):445-50. doi: 10.1126/science.aac5492. Epub 2015 Sep 10.
9
Serial femtosecond crystallography of soluble proteins in lipidic cubic phase.
IUCrJ. 2015 Aug 4;2(Pt 5):545-51. doi: 10.1107/S2052252515013160. eCollection 2015 Sep 1.
10
Architecture of the synaptotagmin-SNARE machinery for neuronal exocytosis.
Nature. 2015 Sep 3;525(7567):62-7. doi: 10.1038/nature14975. Epub 2015 Aug 17.

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