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使用生长的微晶进行固定靶串行飞秒晶体学。

Fixed-target serial femtosecond crystallography using grown microcrystals.

作者信息

Lahey-Rudolph J Mia, Schönherr Robert, Barthelmess Miriam, Fischer Pontus, Seuring Carolin, Wagner Armin, Meents Alke, Redecke Lars

机构信息

Institute of Biochemistry, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.

Center for Free-Electron Laser Science (CFEL), Deutsches Elektronen Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.

出版信息

IUCrJ. 2021 Jun 18;8(Pt 4):665-677. doi: 10.1107/S2052252521005297. eCollection 2021 Jul 1.

Abstract

The crystallization of recombinant proteins in living cells is an exciting new approach in structural biology. Recent success has highlighted the need for fast and efficient diffraction data collection, optimally directly exposing intact crystal-containing cells to the X-ray beam, thus protecting the crystals from environmental challenges. Serial femtosecond crystallography (SFX) at free-electron lasers (XFELs) allows the collection of detectable diffraction even from tiny protein crystals, but requires very fast sample exchange to utilize each XFEL pulse. Here, an efficient approach is presented for high-resolution structure elucidation using serial femtosecond diffraction of micometre-sized crystals of the protein HEX-1 from the fungus on a fixed target. Employing the fast and highly accurate Roadrunner II translation-stage system allowed efficient raster scanning of the pores of micro-patterned, single-crystalline silicon chips loaded with living, crystal-containing insect cells. Compared with liquid-jet and LCP injection systems, the increased hit rates of up to 30% and reduced background scattering enabled elucidation of the HEX-1 structure. Using diffraction data from only a single chip collected within 12 min at the Linac Coherent Light Source, a 1.8 Å resolution structure was obtained with significantly reduced sample consumption compared with previous SFX experiments using liquid-jet injection. This HEX-1 structure is almost superimposable with that previously determined using synchrotron radiation from single HEX-1 crystals grown by sitting-drop vapour diffusion, validating the approach. This study demonstrates that fixed-target SFX using micro-patterned silicon chips is ideally suited for efficient diffraction data collection using living, crystal-containing cells, and offers huge potential for the straightforward structure elucidation of proteins that form intracellular crystals at both XFELs and synchrotron sources.

摘要

在活细胞中实现重组蛋白结晶是结构生物学中一种令人兴奋的新方法。最近的成功突出了快速高效收集衍射数据的必要性,理想情况下是将完整的含晶体细胞直接暴露于X射线束下,从而保护晶体免受环境影响。自由电子激光(XFEL)的串联飞秒晶体学(SFX)即使从微小的蛋白质晶体也能收集到可检测的衍射数据,但需要非常快速的样品交换以利用每个XFEL脉冲。本文提出了一种高效方法,用于在固定靶上对来自真菌的蛋白质HEX-1的微米级晶体进行串联飞秒衍射,以阐明其高分辨率结构。采用快速且高精度的Roadrunner II平移台系统,能够对装载有含晶体活昆虫细胞的微图案化单晶硅芯片的孔进行高效光栅扫描。与液体喷射和LCP注射系统相比,高达30%的命中率提高以及背景散射减少,使得能够阐明HEX-1的结构。利用在直线加速器相干光源(Linac Coherent Light Source)12分钟内从单个芯片收集的衍射数据,获得了分辨率为1.8 Å的结构,与之前使用液体喷射注射的SFX实验相比,样品消耗显著减少。该HEX-1结构与之前通过坐滴气相扩散生长的单个HEX-1晶体的同步辐射所确定的结构几乎完全重叠,验证了该方法。这项研究表明,使用微图案化硅芯片的固定靶SFX非常适合使用含晶体活细胞进行高效衍射数据收集,并且在XFEL和同步辐射源上对形成细胞内晶体的蛋白质进行直接结构阐明方面具有巨大潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ad8/8256716/a90a76797eca/m-08-00665-fig1.jpg

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