Biotech Research and Innovation Centre (BRIC), Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark.
The Novo Nordisk Foundation Center for Stem Cell Biology (Danstem), Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark.
Genome Res. 2019 Apr;29(4):564-575. doi: 10.1101/gr.239277.118. Epub 2019 Feb 22.
The epigenetic regulator is frequently mutated in hematological diseases. Mutations have been shown to arise in hematopoietic stem cells early in disease development and lead to altered DNA methylation landscapes and an increased risk of hematopoietic malignancy. Here, we show by genome-wide mapping of TET2 binding sites in different cell types that TET2 localizes to regions of open chromatin and cell-type-specific enhancers. We find that deletion of in native hematopoiesis as well as fully transformed acute myeloid leukemia (AML) results in changes in transcription factor (TF) activity within these regions, and we provide evidence that loss of TET2 leads to attenuation of chromatin binding of members of the basic helix-loop-helix (bHLH) TF family. Together, these findings demonstrate that TET2 activity shapes the local chromatin environment at enhancers to facilitate TF binding and provides an example of how epigenetic dysregulation can affect gene expression patterns and drive disease development.
表观遗传调控因子在血液系统疾病中经常发生突变。研究表明,突变发生在疾病发展的早期造血干细胞中,并导致 DNA 甲基化景观的改变和造血恶性肿瘤风险的增加。在这里,我们通过在不同细胞类型中全基因组绘制 TET2 结合位点显示,TET2 定位于开放染色质区域和细胞类型特异性增强子。我们发现,在天然造血以及完全转化的急性髓系白血病(AML)中缺失,会导致这些区域转录因子(TF)活性的变化,我们提供的证据表明 TET2 的缺失导致碱性螺旋-环-螺旋(bHLH)TF 家族成员的染色质结合减弱。总之,这些发现表明 TET2 活性塑造了增强子处的局部染色质环境,以促进 TF 结合,并提供了一个例证,说明表观遗传失调如何影响基因表达模式并推动疾病的发展。