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建立种间相互作用模型:在厌氧条件下对腐败梭菌和凝结梭菌的实验。

Development of an interspecies interaction model: An experiment on Clostridium cadaveris and Clostridium sporogenes under anaerobic condition.

机构信息

Division of Environmental Science and Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Gyeongbuk, South Korea.

Division of Environmental Science and Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Gyeongbuk, South Korea.

出版信息

J Environ Manage. 2019 May 1;237:247-254. doi: 10.1016/j.jenvman.2019.02.084. Epub 2019 Feb 22.

DOI:10.1016/j.jenvman.2019.02.084
PMID:30798043
Abstract

The specific primer and probe sets for quantifying Clostridium cadaveris and Clostridium sporogenes using a quantitative real-time PCR were designed. Each primer and probe set detected only the target species very specifically. The two species were cultivated in pure and mixed culture in batch mode with glucose as the only carbon source. The designed QPCR sets were used successfully to estimate the biokinetic parameters of each species in pure culture: i.e., maximum specific growth rate μ, half saturation concentration K, growth yield Y, and decay coefficient K. of C. cadaveris and C. sporogenes were 0.311 ± 0.020 and 0.360 ± 0.019 h, 4.241 ± 1.653 and 5.171 ± 1.097 g/L, 0.301 ± 0.065 and 0.199 ± 0.037 10 copies/g, 0.005 ± 0.043 and 0.009 ± 0.025 h, respectively. The effect of interspecific interaction of on substrate consumption rate and microbial growth was evaluated using mixed culture; curve fitting and comparison of coefficients detected increase in substrate consumption rate but decrease in microbial growth rate; these results imply interspecific interaction effect. A new model was of the interspecific interaction was developed, with focus on accuracy, realism, simplicity and biological significance. This interspecific interaction model may be extended to more-complex bioprocesses such as biological wastewater treatment systems and anaerobic digestion.

摘要

使用定量实时 PCR 设计了用于定量检测腐败梭菌和生孢梭菌的特异性引物和探针。每个引物和探针组都非常特异性地检测目标物种。两种物种在纯培养和混合培养中以葡萄糖为唯一碳源进行批量培养。设计的 QPCR 组成功用于估计每种纯培养物的生物动力学参数:即最大比生长速率μ、半饱和浓度 K、生长产率 Y 和衰减系数 K。腐败梭菌和生孢梭菌的μ分别为 0.311 ± 0.020 和 0.360 ± 0.019 h,K 分别为 4.241 ± 1.653 和 5.171 ± 1.097 g/L,Y 分别为 0.301 ± 0.065 和 0.199 ± 0.037 10 拷贝/g,K 分别为 0.005 ± 0.043 和 0.009 ± 0.025 h。使用混合培养评估了种间相互作用对基质消耗速率和微生物生长的影响;曲线拟合和系数比较检测到基质消耗速率增加,但微生物生长速率降低;这些结果表明存在种间相互作用效应。开发了一种新的种间相互作用模型,重点关注准确性、现实性、简单性和生物学意义。这种种间相互作用模型可以扩展到更复杂的生物过程,如生物废水处理系统和厌氧消化。

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