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基于片段的机器学习能量方法在晶体结构预测中的应用。

Machine-Learned Fragment-Based Energies for Crystal Structure Prediction.

机构信息

School of Chemistry , University of Southampton , Highfield, Southampton , SO17 1BJ , United Kingdom.

出版信息

J Chem Theory Comput. 2019 Apr 9;15(4):2743-2758. doi: 10.1021/acs.jctc.9b00038. Epub 2019 Mar 13.

DOI:10.1021/acs.jctc.9b00038
PMID:30817152
Abstract

Crystal structure prediction involves a search of a complex configurational space for local minima corresponding to stable crystal structures, which can be performed efficiently using atom-atom force fields for the assessment of intermolecular interactions. However, for challenging systems, the limitations in the accuracy of force fields prevent a reliable assessment of the relative thermodynamic stability of potential structures, while the cost of fully quantum mechanical approaches can limit applications of the methods. We present a method to rapidly improve force field lattice energies by correcting two-body interactions with a higher level of theory in a fragment-based approach and predicting these corrections with machine learning. Corrected lattice energies with commonly used density functionals and second order perturbation theory (MP2) all significantly improve the ranking of experimentally known polymorphs where the rigid molecule model is applicable. The relative lattice energies of known polymorphs are also found to systematically improve with the fragment corrections. Predicting two-body interactions with atom-centered symmetry functions in a Gaussian process is found to give highly accurate results using as little as 10-20% of the data for training, reducing the cost of the energy correction by up to an order of magnitude. The machine learning approach opens up the possibility of more widespread use of fragment-based methods in crystal structure prediction, whose increased accuracy at a low computational cost will benefit applications in areas such as polymorph screening and computer-guided materials discovery.

摘要

晶体结构预测涉及到在复杂的构象空间中搜索对应稳定晶体结构的局部最小值,这可以使用原子间力场来有效地进行,以评估分子间相互作用。然而,对于具有挑战性的体系,力场的精度限制了对潜在结构相对热力学稳定性的可靠评估,而全量子力学方法的成本可能限制了这些方法的应用。我们提出了一种通过基于片段的方法用更高水平的理论校正二体相互作用来快速提高力场晶格能的方法,并通过机器学习来预测这些校正。常用密度泛函和二级微扰理论 (MP2) 的校正晶格能都显著提高了刚性分子模型适用的实验已知多晶型体的排名。已知多晶型体的相对晶格能也被发现随着片段校正而系统地提高。在高斯过程中使用基于原子中心的对称函数来预测二体相互作用,仅使用 10-20%的数据进行训练,就可以得到非常准确的结果,从而将能量校正的成本降低一个数量级。机器学习方法为晶体结构预测中更广泛地使用基于片段的方法开辟了可能性,其在低计算成本下的更高精度将有益于多晶型筛选和计算机指导材料发现等领域的应用。

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