State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, No. 1, Dongxiaofu Xiangshan Road, Haidian District, Beijing, 100091, P. R. China.
Research Institute of Subtropical Forestry, Chinese Academy of Forestry, No. 73, Daqiao Road, Fuyang District, Hangzhou, Zhejiang, 311400, P. R. China.
Sci Rep. 2019 Mar 4;9(1):3412. doi: 10.1038/s41598-019-39895-8.
Complete mitochondrial genomes contain large and diverse datasets for species delineation. To better understand the divergence of the two morphologically indistinguishable weevil species in Curculionini, we first sequenced and compared their complete mitochondrial genomes. The complete mitochondrial genomes of Curculio chinensis and Curculio sp. were 19,713 bp with an A + T content of 76.61% and 19,216 bp with an A + T content of 76.85%, respectively. All 37 of the typical mitochondrial genes were determined in both species. The 13 protein sequences of the two species shared high homology (about 90%) except for ATP8 (73.08%). The differences in secondary structure of ATP8 were the number of possible proteins and nucleic acid binding sites. There were 22 and 15 mismatched base-pairs in the tRNA secondary structures from C. chinensis and Curculio sp., respectively. Maximum Likelihood and Bayesian analyses indicated that Curculio sp. is a novel species closely related to C. chinensis. The divergence time estimation suggests that Cryptorhynchinae and Curculionini lines diverged in the Cenozoic Period, while C. chinensis and Curculio sp. diverged at 6.7079 (95% CI 5-13) Mya. This study demonstrates the utility of using complete mitochondrial gene sets for phylogenetic analysis and enhances our understanding of the genetic basis for the evolution of the Curculionini.
完整的线粒体基因组包含用于物种划分的大型和多样化数据集。为了更好地了解 Curculionini 中两种形态上无法区分的象鼻虫物种的分化,我们首先对它们的完整线粒体基因组进行了测序和比较。中华曲牙象鼻虫和 Curculio sp. 的完整线粒体基因组分别为 19713bp 和 19216bp,A+T 含量分别为 76.61%和 76.85%。这两个物种都确定了所有 37 个典型的线粒体基因。这两种物种的 13 种蛋白质序列共享高度同源性(约 90%),除了 ATP8(73.08%)。ATP8 二级结构的差异在于可能的蛋白质和核酸结合位点的数量。中华曲牙象鼻虫和 Curculio sp. 的 tRNA 二级结构分别有 22 个和 15 个错配碱基对。最大似然法和贝叶斯分析表明,Curculio sp. 是一种与中华曲牙象鼻虫密切相关的新物种。分化时间估计表明,Cryptorhynchinae 和 Curculionini 支系在新生代分化,而中华曲牙象鼻虫和 Curculio sp. 则在 6.7079(95%置信区间 5-13)Mya 分化。本研究表明,使用完整的线粒体基因集进行系统发育分析是有用的,并增强了我们对 Curculionini 进化遗传基础的理解。